UnicodeEncodeError: 'latin-1' codec can't encode character '\u2713' in position 0: ordinal not in range(256)

[Michael-Sun]

This issue can be fixed by prepending the babs-check-setup command with: export LC_ALL=en_US.UTF-8 set PYTHONIOENCODING=utf-8

(/dartfs-hpc/rc/home/j/f003z4j/miniconda3/envs/physio/babs) [f003z4j@n09 my_BABS_project]$ babs-check-setup \

--project-root ${PWD} \
--job-test

Will check setups of BABS project located at: /dartfs-hpc/rc/home/j/f003z4j/babs_demo2/my_BABS_project Will submit a test job for testing; will take longer time. Below is the configuration information saved during babs-init in file 'analysis/code/babs_proj_config.yaml':

type_session: multi-ses type_system: slurm input_ds: $INPUTDATASET#1: name: BIDS path_in: https://osf.io/w2nu3/ path_data_rel: inputs/data/BIDS is_zipped: false container: name: toybidsapp-0-0-7 path_in: /dartfs-hpc/rc/home/j/f003z4j/babs_demo2/toybidsapp-container

Checking the BABS project itself... Traceback (most recent call last): File "/dartfs-hpc/rc/home/j/f003z4j/miniconda3/envs/physio/babs/bin/babs-check-setup", line 8, in sys.exit(babs_check_setup_main()) File "/dartfs-hpc/rc/home/j/f003z4j/miniconda3/envs/physio/babs/lib/python3.9/site-packages/babs/cli.py", line 296, in babs_check_setup_main babs_proj.babs_check_setup(input_ds, args.job_test) File "/dartfs-hpc/rc/home/j/f003z4j/miniconda3/envs/physio/babs/lib/python3.9/site-packages/babs/babs.py", line 666, in babs_check_setup print(CHECK_MARK + " All good!") UnicodeEncodeError: 'latin-1' codec can't encode character '\u2713' in position 0: ordinal not in range(256)

[zhao-cy]

Thank you Michael for reporting this issue + suggested way to get around it! I'll add to the docs (example walkthrough + babs-check-setup)