[x] fMRIPrep with FreeSurfer results ingressed - 23.1.3
[x] QSIPrep - 0.18.1 (latest version on docker)
Find --sloppy version YAML file of this BIDS version in babs_tests repo
[x] XCP-D - 0.4.0
older versions of fMRIPrep: - to show how to apply BABS on older versions/legacy output layout (added on 7/13/23)
[x] fMRIPrep - e.g., 20.2.3
[x] fMRIPrep with FreeSurfer results ingressed - e.g., 20.2.3
Also to clean the README.md table:
[x] For YAML files for old BIDS Apps:
[x] move those YAML files to babs_tests github repo
[ ] no need to do: make another README in the sub-folder, saying they're for old BIDS Apps + tested with old BABS version. We encourage you using the updated YAML files in the main folder. If you do use these old YAML files, please see if it's still working w/ current BABS version + you could get desired results.
[ ] no need to do; i have clarified in the README | change fMRIPrep --anat-only to fMRIPrep FreeSurfer, as only FreeSurfer results are saved, and other anatomical derivatives (e.g., transforms) (in fmriprep folder for old fmriprep layout) are discarded/not saved into output RIA.
for popular BIDS Apps + recent stable version:
--sloppy
version YAML file of this BIDS version inbabs_tests
repoolder versions of fMRIPrep: - to show how to apply BABS on older versions/legacy output layout (added on 7/13/23)
Also to clean the README.md table:
babs_tests
github repofMRIPrep --anat-only
tofMRIPrep FreeSurfer
, as only FreeSurfer results are saved, and other anatomical derivatives (e.g., transforms) (infmriprep
folder for old fmriprep layout) are discarded/not saved into output RIA.(Edited on 7/11/2023 and 8/7/2023)