PennLINC / mobilephenomics

This repository contains documentation and scripts pertaining to the mobile phenomics project.
https://pennlinc.github.io/mobilephenomics/
MIT License
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Use multi-echo fMRI protocol #9

Closed tsalo closed 2 months ago

tsalo commented 7 months ago
  1. Take the fMRI scan from Satterthwaite/MEBOLD_ABCD_COMPARE/DCAN:func_run-01_task-rest_acq-multiecho
  2. Take the field maps from Satterthwaite/MEBOLD_ABCD_COMPARE/DCAN:fmap_dir-[PA|AP]_acq-MESE, but modify:
    • Drop all but the first echo.
    • Enable magnitude+phase reconstruction or disable Maxwell correction, as magnitude+phase reconstruction automatically disables Maxwell correction and this will cause a slight mismatch between the fMRI scan's distortion and the field maps' distortion.
  3. Rename frackack task to fracback.