Closed araikes closed 4 years ago
Have you seen this section?
I have. My image is RAS and doesn't have a zeroed out sform. I was just hoping you had ready-made code for making sure it was conformed so I didn't need to reinvent it.
I'll work on it.
Got it done and working.
Hi @araikes
Can you share details on how you got this to work? I'm in the same position as you and would like to use an atlas that's in RAS format.
I know that we can use custom atlases. I have an atlas file that is a fusion of the Schaefer 400x17 atlas and Brainnetome's subcortical gray ROIs.
Do you have any stock code for conforming it to the necessary orientation for QSIPrep's reconstruction? I know that I'd need to do the legwork on importing all of the ROI names.