qsiprep html doesn't have visual qa output

[andrew-yian-sun]

I am running qsiprep v0.14.3 on 1 participant with mostly default settings. The all the files seem to be there (albeit named differently than expected from the documentation), but the visual QA is missing from the html file. Only "Methods" and "Errors" tab are there. In "Errors", it says there are none to report.

The command I ran:

sudo docker run -ti --rm \
--volume /blc/NIA_R21/data_mri/dataOLD_BIDS_test:/data:ro \
--volume /blc/NIA_R21/data_mri/dataOLD_BIDS_test/derivatives:/out \
--volume ${FREESURFER_HOME}:/opt/licenseDir \
pennbbl/qsiprep:latest \
/data \
/out \
participant \
--participant_label 0061 \
--output_resolution 0.95 \
--skip_bids_validation \
--fs-license-file /opt/licenseDir/license.txt 

OS: Linux CentOS 7 QSIprep version: 0.14.3

[andrew-yian-sun]

Issue was resolved after mounting $HOME to /work in docker and making sure --work_dir /work was set in qsiprep options.

time sudo docker run -ti --rm \
--volume /blc/NIA_R21/data_mri/dataOLD_BIDS_test:/data:ro \
--volume $HOME:/work \
--volume /blc/NIA_R21/data_mri/dataOLD_BIDS_test/derivatives:/out \
--volume ${FREESURFER_HOME}:/opt/licenseDir \
pennbbl/qsiprep:latest \
/data \
/out \
participant \
--participant_label 0117 \
--output_resolution 0.95 \
--skip_bids_validation \
--work_dir /work \
--fs-license-file /opt/licenseDir/license.txt \