Qsiprep infant only option with custom infant atlas?

PennLINC / qsiprep

Preprocessing of diffusion MRI

http://qsiprep.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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Qsiprep infant only option with custom infant atlas? #531

Open dyhan316 opened 1 year ago

dyhan316 commented 1 year ago

Hello experts, I want to run qsiprep on infant data. It seems that I should use --infant with --dwi-only so that the infant template is used. However, what should the custom atlas’s images be registered to? The documentation states that the custom atlas should be registered to MNI152NLin2009cAsym. However, Since --infant will swap the template adult MNI template to the infant one, I was wondering if the same should be done to the atlas, or is it OK to use the adult atlas with infant template?

tsalo commented 2 weeks ago

We hope to support more flexible output spaces in the future but it's not currently possible.