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PennLINC / xcpEngine

Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
MIT License
66 stars 42 forks source link

Build in a minimal structural processing pipeline #37

Closed adrose closed 6 years ago

adrose commented 7 years ago

As not all groups will be interested in running the full ANTsCT pipeline - the antsCT module should be able to run just BE and registration as this will produce all of the required inputs for norm to run.

sattertt commented 7 years ago

Goal is to have by next fri 9/22 have compatibility with CBICA output ready. Need to go to cbica meeting and say "it's done."

adrose commented 7 years ago

This will just need to call this ants script here:

https://github.com/ANTsX/ANTs/blob/master/Scripts/antsRegistrationSyN.sh

adrose commented 7 years ago

The way I had built the struc module - I had built in a specific BE section, just needs a registration and segmentation - which I think @rciric has already built in