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PennLINC / xcpEngine

Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
MIT License
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No residualized CIFTI outputs #411

Open YukiSakai1209 opened 3 years ago

YukiSakai1209 commented 3 years ago

I tried the current 1.2.3 version with the T1w and bold data preprocessed using fMRIprep 20.2.1, 20.2.0, or 20.2.0rc2. In general, everything works quite well in the volumetric space analysis. However, I cannot get the CIFTI output. I have the normal output of fmriprep including freesurfer/fsaverage and *task-rest_space-fsLR_den-91k_bold.dtseries.nii. How can I get the CIFTI output? The analysis information and whole log were below. Are there any options or tips to get the residualized CIFTI outputs?

Cohort file Paste cohort file between the triple backticks

id0, id1,img
sub-01, ses-01, /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
...,...,...

Design File Paste your entire design (.dsn) file between the triple backticks

###################################################################
# ANALYSIS VARIABLES
###################################################################

analysis=fc_$(whoami)
design=/dcn_dir/fc-36p_despike.dsn
sequence=anatomical
standard=MNI%2x2x2

###################################################################
# PIPELINE
###################################################################

pipeline=prestats,confound2,regress,fcon,reho,alff,roiquant,norm,qcfc

###################################################################
# 1 PRESTATS
###################################################################

prestats_rerun[1]=1
prestats_cleanup[1]=1
prestats_process[1]=FMP

###################################################################
# 2 CONFOUND2
###################################################################

confound2_rps[2]=1
confound2_rms[2]=0
confound2_wm[2]=1
confound2_csf[2]=1
confound2_gsr[2]=1
confound2_acompcor[2]=0
confound2_tcompcor[2]=0
confound2_aroma[2]=0
confound2_past[2]=0
confound2_dx[2]=1
confound2_sq[2]=2
confound2_custom[2]=
confound2_censor[2]=0
confound2_censor_contig[2]=0
confound2_rerun[2]=1
confound2_cleanup[2]=1

###################################################################
# 3  REGRESS
###################################################################

regress_tmpf[3]=butterworth
regress_hipass[3]=0.01
regress_lopass[3]=0.08
regress_tmpf_order[3]=1
regress_tmpf_pass[3]=2
regress_tmpf_ripple[3]=0.5
regress_tmpf_ripple2[3]=20
regress_dmdt[3]=2
regress_1ddt[3]=1
regress_smo[3]=6
regress_sptf[3]=susan
regress_usan[3]=default
regress_usan_space[3]=
regress_rerun[3]=0
regress_cleanup[3]=1
regress_process[3]=DMT-DSP-TMP-REG

###################################################################
# 4 FCON
###################################################################

fcon_atlas[4]=all
fcon_metric[4]=corrcoef
fcon_thr[4]=N
fcon_rerun[4]=0
fcon_cleanup[4]=1

###################################################################
# 5 REHO
###################################################################

reho_nhood[5]=vertices
reho_roikw[5]=0 # does nothing at the moment
reho_sptf[5]=susan
reho_smo[5]=6
reho_rerun[5]=0
reho_cleanup[5]=1

###################################################################
# 6 ALFF
###################################################################

alff_hipass[6]=0.01
alff_lopass[6]=0.08
alff_sptf[6]=susan
alff_smo[6]=6
alff_rerun[6]=0
alff_cleanup[6]=1

###################################################################
# 7 ROIQUANT
###################################################################

roiquant_atlas[7]=all
roiquant_globals[7]=1
roiquant_vol[7]=0
roiquant_rerun[7]=0
roiquant_cleanup[7]=1

###################################################################
# 8 NORM
###################################################################
norm_primary[8]=1
norm_rerun[8]=0
norm_cleanup[8]=1

##################################################################
# 9 QCFC
###################################################################
qcfc_atlas[9]=power264
qcfc_sig[9]=fdr
qcfc_rerun[9]=0
qcfc_cleanup[9]=1

log file


###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗                   XCP ENGINE LOCALISER                    ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗                 FMRI PREPROCESSING MODULE                 ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> 3dinfo -orient /tmp/sub-01_ses-01-prestats-031316970~TEMP~.nii.gz
                             -   -   -
>> 3dinfo -orient /xcpEngine/space/MNI/MNI-2x2x2.nii.gz
                             -   -   -
>> immv /tmp/sub-01_ses-01-prestats-031316970~TEMP~ /tmp/sub-01_ses-01-prestats-031316970~TEMP~_FMP
                             -   -   -
>> 3dresample -orient LPI -inset /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz -prefix /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -overwrite
                             -   -   -
>> antsApplyTransforms -i /data/sub-01/ses-01/..//anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -i /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -i /data/sub-01/ses-01/..//anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -i /data/sub-01/ses-01/..//anat/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_structmask.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> fslmaths /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_structmask.nii.gz /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz
                             -   -   -
>> antsApplyTransforms -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz /out/sub-01/ses-01/prestats/sub-01_ses-01_structbrain.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/maskOverlap.R -m /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz
                             -   -   -
>> imcp /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz
                             -   -   -
>> fslval /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz pixdim4
                             -   -   -
>> ${XCPEDIR}/utils/addTR.py -i /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz -o /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz -t 2.500000
                             -   -   -
>> 3dresample -orient LPI -inset /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz -prefix /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz -overwrite

###################################################################
#  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  #
#                                                                 #
#  ·                   CONFOUND MODEL MODULE                   ·  #
#                                                                 #
#  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  ·  #
###################################################################

                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j stdVARS -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_dvars-std.1D
                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j rps -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_realignment.1D
                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j fd -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relRMS.1D
                             -   -   -
>> ${XCPEDIR}/utils/fd.R -r /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_realignment.1D -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_fd.1D
                             -   -   -
>> ${XCPEDIR}/utils/dvars -i /out/sub-01/ses-01/sub-01_ses-01.nii.gz -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_dvars -s /tmp/sub-01_ses-01-confound2-410208730~TEMP~
                             -   -   -
>> fslmaths /out/sub-01/ses-01/sub-01_ses-01.nii.gz -Tmean /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensity.nii.gz
                             -   -   -
>> bet /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensity.nii.gz /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensityBrain.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/sub-01_ses-01.nii.gz -Tperc 25 /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-lowerQuartile.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/sub-01_ses-01.nii.gz -Tperc 75 /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-upperQuartile.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-upperQuartile.nii.gz -sub /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-lowerQuartile.nii.gz -div 1.34897950039 /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-temporalSD.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/sub-01_ses-01.nii.gz -sub /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensity.nii.gz -Tar1 /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-temporalAR.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-temporalAR.nii.gz -mul -1 -add 1 -mul 2 -sqrt -mul /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-temporalSD.nii.gz /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-predictedSD.nii.gz
                             -   -   -
>> fslstats /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-predictedSD.nii.gz -k /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensityBrain.nii.gz -M
                             -   -   -
>> fslnvols /out/sub-01/ses-01/sub-01_ses-01.nii.gz
                             -   -   -
>> fslroi /out/sub-01/ses-01/sub-01_ses-01.nii.gz /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t-1.nii.gz 0 243
                             -   -   -
>> fslroi /out/sub-01/ses-01/sub-01_ses-01.nii.gz /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t.nii.gz 1 244
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t.nii.gz -sub /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t-1.nii.gz -sqr /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-tdiff-sq.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t.nii.gz -sub /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-t-1.nii.gz -div /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-predictedSD.nii.gz -sqr /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-tdiff-vox-std.nii.gz
                             -   -   -
>> fslstats -t /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-tdiff-sq.nii.gz -k /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensityBrain.nii.gz -M
                             -   -   -
>> fslstats -t /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-tdiff-vox-std.nii.gz -k /tmp/sub-01_ses-01-confound2-410208730~TEMP~-dvars-meanIntensityBrain.nii.gz -M
                             -   -   -
>> ${XCPEDIR}/utils/1dTool.R -i /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_dvars-std.1D -o mean -f /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_dvars-mean.txt
                             -   -   -
>> fslstats -t /out/sub-01/ses-01/sub-01_ses-01.nii.gz -S
                             -   -   -
>> 3dTqual -automask /out/sub-01/ses-01/sub-01_ses-01.nii.gz
++ 3dTqual: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
++ Autoclip value = 6471.67
++ 46058 out of 202370 voxels survive the clip
++ Median=0.00513792  Median-3.5*MAD=0.00148943  Median+3.5*MAD=0.00878641
                             -   -   -
>> 3dToutcount -automask /out/sub-01/ses-01/sub-01_ses-01.nii.gz
++ 3dToutcount: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
++ 45779 voxels passed mask/clip
                             -   -   -
>> ${XCPEDIR}/utils/featureCorrelation.R -i /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_dvars-std.1D,/out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relRMS.1D
                             -   -   -
>> ${XCPEDIR}/utils/tmask.R -s /out/sub-01/ses-01/sub-01_ses-01-nFlags.1D -t 0.5 -o /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_tmask.1D -m 0
                             -   -   -
>> ${XCPEDIR}/utils/1dTool.R -i /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relRMS.1D -o max -f /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relMaxRMS.txt
                             -   -   -
>> ${XCPEDIR}/utils/1dTool.R -i /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relRMS.1D -o mean -f /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_relMeanRMS.txt
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x null -y /out/sub-01/ses-01/confound2/mc/sub-01_ses-01_realignment.1D -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j csf -o /out/sub-01/ses-01/confound2/sub-01_ses-01_csf.1D
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -y /out/sub-01/ses-01/confound2/sub-01_ses-01_csf.1D -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j gsr -o /out/sub-01/ses-01/confound2/sub-01_ses-01_gsr.1D
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -y /out/sub-01/ses-01/confound2/sub-01_ses-01_gsr.1D -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/generate_confmat.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_fmriconf.tsv -j wm -o /out/sub-01/ses-01/confound2/sub-01_ses-01_wm.1D
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -y /out/sub-01/ses-01/confound2/sub-01_ses-01_wm.1D -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -y OPdx1 -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/mbind.R -x /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -y OPpower2 -o /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D
                             -   -   -
>> fslnvols /out/sub-01/ses-01/sub-01_ses-01.nii.gz

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗                CONFOUND REGRESSION MODULE                 ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> ${XCPEDIR}/utils/dmdt.R -d 2 -i /out/sub-01/ses-01/sub-01_ses-01.nii.gz -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT.nii.gz -m /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/1dDMDT.R -i /out/sub-01/ses-01/confound2/sub-01_ses-01_confmat.1D -d 2 -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_confmat.1D
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -mul /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT
                             -   -   -
>> fslval /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT.nii.gz pixdim4
                             -   -   -
>> 3dDespike -prefix /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP.nii.gz -nomask -quiet -NEW /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT.nii.gz
++ 3dDespike: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
++ Authored by: RW Cox
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Elapsed despike time =  478ms
                             -   -   -
>> ${XCPEDIR}/utils/1dDespike -i /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_confmat.1D -x /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_confmat.1D -r 1.000000 -n -q
                             -   -   -
>> 1dtranspose /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_confmat.1D /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike_tp.1D
                             -   -   -
>> fslascii2img /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike_tp.1D 36.00000000000000000000 1 1 244 1 1 1 1.000000 /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike.nii.gz
                             -   -   -
>> 3dcopy /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike.nii.gz /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike
++ 3dcopy: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
*+ WARNING: NO spatial transform (neither qform nor sform), in NIfTI file '/tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike.nii.gz'
                             -   -   -
>> 3dDespike -NEW -quiet -nomask -prefix /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike_despike /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike.1D
++ 3dDespike: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
++ Authored by: RW Cox
++ Elapsed despike time =  2ms
                             -   -   -
>> 1dtranspose /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_1dDespike-1dDespike_despike.1D /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_confmat.1D
                             -   -   -
>> ${XCPEDIR}/utils/tfilter -i /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP.nii.gz -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP.nii.gz -a 2.500000 -f butterworth -h 0.01 -l 0.08 -m /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r 1 -d 2 -1 confmat:/tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_confmat.1D
                             -   -   -
>> remove_ext /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP.nii.gz
                             -   -   -
>> fslnvols /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP.nii.gz
                             -   -   -
>> fslval /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP.nii.gz pixdim4
                             -   -   -
>> ${XCPEDIR}/utils/genfilter.R -i /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP.nii.gz -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP.nii.gz -f butterworth -m /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -c 0.01 -l 0.08 -r 1 -d 2
                             -   -   -
>> ${XCPEDIR}/utils/1dGenfilter.R -i /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_confmat.1D -o /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_confmat.1D -f butterworth -t 1.000000 -c 0.01 -l 0.08 -r 1 -d 2
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -mul /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/regress/sub-01_ses-01_confmat.1D
                             -   -   -
>> 3dTproject -input /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP.nii.gz -ort /out/sub-01/ses-01/regress/sub-01_ses-01_confmat.1D -prefix /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_REG.nii.gz
++ 3dTproject: AFNI version=AFNI_20.3.01 (Oct 19 2020) [64-bit]
++ Authored by: Cox the Algebraic (Linear)
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Setting up regressors
++ 1 Blocks * 3 polynomials -- 3 polort regressors
 + -- 36 other fixed ort regressors
++ 244 retained time points MINUS 39 regressors ==> 205 D.O.F. left
++ no -mask option ==> processing all 202370 voxels in dataset
++ Compute pseudo-inverse of fixed orts
++ Loading dataset
*+ WARNING: 3dTproject input data :: 161094 vectors are constant
++ Starting project-orization
++ Convert results to output dataset
++ Output dataset /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_REG.nii.gz
++ ===== clock time = 8s 955ms
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -mul /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_REG /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_REG
                             -   -   -
>> imcp /tmp/sub-01_ses-01-regress-698361698~TEMP~_DMT_DSP_TMP_REG.nii.gz /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz
                             -   -   -
>> fslval /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz pixdim4
                             -   -   -
>> ${XCPEDIR}/utils/addTR.py -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -o /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -t 2.500000
                             -   -   -
>> ${XCPEDIR}/utils/sfilter -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -o /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz -s susan -k 6 -m /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -u /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz
                             -   -   -
>> fslstats /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -p 50
                             -   -   -
>> susan /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz 10653.42187500000000000000 2.54796540086508437971 3 1 1 /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz 10653.42187500000000000000 /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗               FUNCTIONAL CONNECTOME MODULE                ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> fslstats /xcpEngine/atlas/HarvardOxford/HarvardOxfordMNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/HarvardOxford/HarvardOxfordMNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -l /xcpEngine/atlas/HarvardOxford/HarvardOxfordNodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/HarvardOxford/sub-01_ses-01_HarvardOxford_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/HarvardOxford/sub-01_ses-01_HarvardOxford_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/HarvardOxford/sub-01_ses-01_HarvardOxford_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/aal116/aal116MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/aal116/aal116MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -l /xcpEngine/atlas/aal116/aal116NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/aal116/sub-01_ses-01_aal116_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/aal116/sub-01_ses-01_aal116_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/aal116/sub-01_ses-01_aal116_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/desikanKilliany/desikanKillianyMNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/desikanKilliany/desikanKillianyMNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -l /xcpEngine/atlas/desikanKilliany/desikanKillianyNodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/desikanKilliany/sub-01_ses-01_desikanKilliany_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/desikanKilliany/sub-01_ses-01_desikanKilliany_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/desikanKilliany/sub-01_ses-01_desikanKilliany_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/glasser360/glasser360MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/glasser360/glasser360MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -l /xcpEngine/atlas/glasser360/glasser360NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/glasser360/sub-01_ses-01_glasser360_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/glasser360/sub-01_ses-01_glasser360_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/glasser360/sub-01_ses-01_glasser360_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/gordon333/gordon333MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/gordon333/gordon333MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -l /xcpEngine/atlas/gordon333/gordon333NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/gordon333/sub-01_ses-01_gordon333_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/gordon333/sub-01_ses-01_gordon333_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/gordon333/sub-01_ses-01_gordon333_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/power264/power264MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/power264/power264MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -l /xcpEngine/atlas/power264/power264NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/power264/sub-01_ses-01_power264_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/power264/sub-01_ses-01_power264_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/power264/sub-01_ses-01_power264_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer100x17/schaefer100x17MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer100x17/schaefer100x17MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -l /xcpEngine/atlas/schaefer100x17/schaefer100x17NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer100x17/sub-01_ses-01_schaefer100x17_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer100x17/sub-01_ses-01_schaefer100x17_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer100x17/sub-01_ses-01_schaefer100x17_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer100x7/schaefer100x7MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer100x7/schaefer100x7MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -l /xcpEngine/atlas/schaefer100x7/schaefer100x7NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer100x7/sub-01_ses-01_schaefer100x7_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer100x7/sub-01_ses-01_schaefer100x7_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer100x7/sub-01_ses-01_schaefer100x7_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer200x17/schaefer200x17MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer200x17/schaefer200x17MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -l /xcpEngine/atlas/schaefer200x17/schaefer200x17NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer200x17/sub-01_ses-01_schaefer200x17_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer200x17/sub-01_ses-01_schaefer200x17_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer200x17/sub-01_ses-01_schaefer200x17_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer200x7/schaefer200x7MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer200x7/schaefer200x7MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -l /xcpEngine/atlas/schaefer200x7/schaefer200x7NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer200x7/sub-01_ses-01_schaefer200x7_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer200x7/sub-01_ses-01_schaefer200x7_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer200x7/sub-01_ses-01_schaefer200x7_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer400x17/schaefer400x17MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer400x17/schaefer400x17MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -l /xcpEngine/atlas/schaefer400x17/schaefer400x17NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer400x17/sub-01_ses-01_schaefer400x17_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer400x17/sub-01_ses-01_schaefer400x17_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer400x17/sub-01_ses-01_schaefer400x17_network.txt
                             -   -   -
>> fslstats /xcpEngine/atlas/schaefer400x7/schaefer400x7MNI.nii.gz -R
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /xcpEngine/atlas/schaefer400x7/schaefer400x7MNI.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -n MultiLabel -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/roi2ts.R -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -l /xcpEngine/atlas/schaefer400x7/schaefer400x7NodeIndex.1D
                             -   -   -
>> ${XCPEDIR}/utils/ts2adjmat.R -t /out/sub-01/ses-01/fcon/schaefer400x7/sub-01_ses-01_schaefer400x7_ts.1D
                             -   -   -
>> ${XCPEDIR}/utils/adjmat2pajek.R -a /out/sub-01/ses-01/fcon/schaefer400x7/sub-01_ses-01_schaefer400x7_network.txt -t N
                             -   -   -
>> ${XCPEDIR}/utils/missingIdx.R -i /out/sub-01/ses-01/fcon/schaefer400x7/sub-01_ses-01_schaefer400x7_network.txt

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗                REGIONAL HOMOGENEITY MODULE                ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> 3dReHo -prefix /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -inset /out/sub-01/ses-01/sub-01_ses-01.nii.gz -nneigh 27
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Final vox neighbood: ellipsoid with Nneigh=27 and radii (1.900,1.900,1.900).
++ ReHo (Kendall's W) calculated.
                             -   -   -
>> fslstats /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -M
                             -   -   -
>> fslstats /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -S
                             -   -   -
>> fslmaths /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -sub 0.161703 -div 0.089156 -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/sfilter -i /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -o /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -s susan -k 6 -m /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -u /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz
                             -   -   -
>> fslstats /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -p 50
                             -   -   -
>> susan /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz 10653.42187500000000000000 2.54796540086508437971 3 1 1 /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolume.nii.gz 10653.42187500000000000000 /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz
                             -   -   -
>> fslstats /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -M
                             -   -   -
>> fslstats /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -S
                             -   -   -
>> fslmaths /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -sub 0.151395 -div 0.066766 -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ_sm6.nii.gz

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗      AMPLITUDE OF LOW-FREQUENCY FLUCTUATIONS MODULE       ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> fslnvols /out/sub-01/ses-01/sub-01_ses-01.nii.gz
                             -   -   -
>> fslval /out/sub-01/ses-01/sub-01_ses-01.nii.gz pixdim4
                             -   -   -
>> fslpspec /tmp/sub-01_ses-01-alff-503252177~TEMP~EVEN.nii.gz /tmp/sub-01_ses-01-alff-503252177~TEMP~PS.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-alff-503252177~TEMP~PS.nii.gz -sqrt /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SQRT.nii.gz
                             -   -   -
>> fslroi /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SQRT.nii.gz /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SLOW.nii.gz 5 44
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SLOW.nii.gz -Tmean -mul 44 /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
                             -   -   -
>> fslstats /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -M
                             -   -   -
>> fslstats /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -S
                             -   -   -
>> fslmaths /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -sub 27350.374240 -div 23150.907019 -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
                             -   -   -
>> fslnvols /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz
                             -   -   -
>> fslval /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz pixdim4
                             -   -   -
>> fslpspec /tmp/sub-01_ses-01-alff-503252177~TEMP~EVEN.nii.gz /tmp/sub-01_ses-01-alff-503252177~TEMP~PS.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-alff-503252177~TEMP~PS.nii.gz -sqrt /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SQRT.nii.gz
                             -   -   -
>> fslroi /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SQRT.nii.gz /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SLOW.nii.gz 5 44
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-alff-503252177~TEMP~PS-SLOW.nii.gz -Tmean -mul 44 /out/sub-01/ses-01/alff/sub-01_ses-01_alff_sm6.nii.gz
                             -   -   -
>> fslstats /out/sub-01/ses-01/alff/sub-01_ses-01_alff_sm6.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -M
                             -   -   -
>> fslstats /out/sub-01/ses-01/alff/sub-01_ses-01_alff_sm6.nii.gz -k /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -S
                             -   -   -
>> fslmaths /out/sub-01/ses-01/alff/sub-01_ses-01_alff_sm6.nii.gz -sub 13055.608427 -div 9402.431588 -mul /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ_sm6.nii.gz

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗             ATLAS-BASED QUANTIFICATION MODULE             ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> fslstats /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -R
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -x /xcpEngine/atlas/HarvardOxford/HarvardOxfordNodeIndex.1D -n /xcpEngine/atlas/HarvardOxford/HarvardOxfordNodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -n HarvardOxford -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_alff-quantifyAtlas_HarvardOxford_mean.1D -a anatomical_alff_mean_HarvardOxford -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -n HarvardOxford -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_alffZ-quantifyAtlas_HarvardOxford_mean.1D -a anatomical_alffZ_mean_HarvardOxford -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -n HarvardOxford -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_reho-quantifyAtlas_HarvardOxford_mean.1D -a anatomical_reho_mean_HarvardOxford -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -n HarvardOxford -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_HarvardOxford.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_mean_rehoZ-quantifyAtlas_HarvardOxford_mean.1D -a anatomical_rehoZ_mean_HarvardOxford -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_HarvardOxford_names.1D -o /out/sub-01/ses-01/roiquant/HarvardOxford/sub-01_ses-01_HarvardOxford_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -x /xcpEngine/atlas/aal116/aal116NodeIndex.1D -n /xcpEngine/atlas/aal116/aal116NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -n aal116 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_alff-quantifyAtlas_aal116_mean.1D -a anatomical_alff_mean_aal116 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -n aal116 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_alffZ-quantifyAtlas_aal116_mean.1D -a anatomical_alffZ_mean_aal116 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -n aal116 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_reho-quantifyAtlas_aal116_mean.1D -a anatomical_reho_mean_aal116 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -n aal116 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_aal116.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_mean_rehoZ-quantifyAtlas_aal116_mean.1D -a anatomical_rehoZ_mean_aal116 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_aal116_names.1D -o /out/sub-01/ses-01/roiquant/aal116/sub-01_ses-01_aal116_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -x /xcpEngine/atlas/desikanKilliany/desikanKillianyNodeIndex.1D -n /xcpEngine/atlas/desikanKilliany/desikanKillianyNodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -n desikanKilliany -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_alff-quantifyAtlas_desikanKilliany_mean.1D -a anatomical_alff_mean_desikanKilliany -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -n desikanKilliany -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_alffZ-quantifyAtlas_desikanKilliany_mean.1D -a anatomical_alffZ_mean_desikanKilliany -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -n desikanKilliany -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_reho-quantifyAtlas_desikanKilliany_mean.1D -a anatomical_reho_mean_desikanKilliany -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -n desikanKilliany -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_desikanKilliany.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_mean_rehoZ-quantifyAtlas_desikanKilliany_mean.1D -a anatomical_rehoZ_mean_desikanKilliany -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_desikanKilliany_names.1D -o /out/sub-01/ses-01/roiquant/desikanKilliany/sub-01_ses-01_desikanKilliany_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -x /xcpEngine/atlas/glasser360/glasser360NodeIndex.1D -n /xcpEngine/atlas/glasser360/glasser360NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -n glasser360 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_alff-quantifyAtlas_glasser360_mean.1D -a anatomical_alff_mean_glasser360 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -n glasser360 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_alffZ-quantifyAtlas_glasser360_mean.1D -a anatomical_alffZ_mean_glasser360 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -n glasser360 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_reho-quantifyAtlas_glasser360_mean.1D -a anatomical_reho_mean_glasser360 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -n glasser360 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_glasser360.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_mean_rehoZ-quantifyAtlas_glasser360_mean.1D -a anatomical_rehoZ_mean_glasser360 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_glasser360_names.1D -o /out/sub-01/ses-01/roiquant/glasser360/sub-01_ses-01_glasser360_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -x /xcpEngine/atlas/gordon333/gordon333NodeIndex.1D -n /xcpEngine/atlas/gordon333/gordon333NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -n gordon333 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_alff-quantifyAtlas_gordon333_mean.1D -a anatomical_alff_mean_gordon333 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -n gordon333 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_alffZ-quantifyAtlas_gordon333_mean.1D -a anatomical_alffZ_mean_gordon333 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -n gordon333 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_reho-quantifyAtlas_gordon333_mean.1D -a anatomical_reho_mean_gordon333 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -n gordon333 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_gordon333.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_mean_rehoZ-quantifyAtlas_gordon333_mean.1D -a anatomical_rehoZ_mean_gordon333 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_gordon333_names.1D -o /out/sub-01/ses-01/roiquant/gordon333/sub-01_ses-01_gordon333_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -x /xcpEngine/atlas/power264/power264NodeIndex.1D -n /xcpEngine/atlas/power264/power264NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -n power264 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_alff-quantifyAtlas_power264_mean.1D -a anatomical_alff_mean_power264 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -n power264 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_alffZ-quantifyAtlas_power264_mean.1D -a anatomical_alffZ_mean_power264 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -n power264 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_reho-quantifyAtlas_power264_mean.1D -a anatomical_reho_mean_power264 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -n power264 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_power264.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_mean_rehoZ-quantifyAtlas_power264_mean.1D -a anatomical_rehoZ_mean_power264 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_power264_names.1D -o /out/sub-01/ses-01/roiquant/power264/sub-01_ses-01_power264_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -x /xcpEngine/atlas/schaefer100x17/schaefer100x17NodeIndex.1D -n /xcpEngine/atlas/schaefer100x17/schaefer100x17NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -n schaefer100x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_alff-quantifyAtlas_schaefer100x17_mean.1D -a anatomical_alff_mean_schaefer100x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -n schaefer100x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_alffZ-quantifyAtlas_schaefer100x17_mean.1D -a anatomical_alffZ_mean_schaefer100x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -n schaefer100x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_reho-quantifyAtlas_schaefer100x17_mean.1D -a anatomical_reho_mean_schaefer100x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -n schaefer100x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_mean_rehoZ-quantifyAtlas_schaefer100x17_mean.1D -a anatomical_rehoZ_mean_schaefer100x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x17/sub-01_ses-01_schaefer100x17_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -x /xcpEngine/atlas/schaefer100x7/schaefer100x7NodeIndex.1D -n /xcpEngine/atlas/schaefer100x7/schaefer100x7NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -n schaefer100x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_alff-quantifyAtlas_schaefer100x7_mean.1D -a anatomical_alff_mean_schaefer100x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -n schaefer100x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_alffZ-quantifyAtlas_schaefer100x7_mean.1D -a anatomical_alffZ_mean_schaefer100x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -n schaefer100x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_reho-quantifyAtlas_schaefer100x7_mean.1D -a anatomical_reho_mean_schaefer100x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -n schaefer100x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer100x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_mean_rehoZ-quantifyAtlas_schaefer100x7_mean.1D -a anatomical_rehoZ_mean_schaefer100x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer100x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer100x7/sub-01_ses-01_schaefer100x7_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -x /xcpEngine/atlas/schaefer200x17/schaefer200x17NodeIndex.1D -n /xcpEngine/atlas/schaefer200x17/schaefer200x17NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -n schaefer200x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_alff-quantifyAtlas_schaefer200x17_mean.1D -a anatomical_alff_mean_schaefer200x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -n schaefer200x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_alffZ-quantifyAtlas_schaefer200x17_mean.1D -a anatomical_alffZ_mean_schaefer200x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -n schaefer200x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_reho-quantifyAtlas_schaefer200x17_mean.1D -a anatomical_reho_mean_schaefer200x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -n schaefer200x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_mean_rehoZ-quantifyAtlas_schaefer200x17_mean.1D -a anatomical_rehoZ_mean_schaefer200x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x17/sub-01_ses-01_schaefer200x17_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -x /xcpEngine/atlas/schaefer200x7/schaefer200x7NodeIndex.1D -n /xcpEngine/atlas/schaefer200x7/schaefer200x7NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -n schaefer200x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_alff-quantifyAtlas_schaefer200x7_mean.1D -a anatomical_alff_mean_schaefer200x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -n schaefer200x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_alffZ-quantifyAtlas_schaefer200x7_mean.1D -a anatomical_alffZ_mean_schaefer200x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -n schaefer200x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_reho-quantifyAtlas_schaefer200x7_mean.1D -a anatomical_reho_mean_schaefer200x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -n schaefer200x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer200x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_mean_rehoZ-quantifyAtlas_schaefer200x7_mean.1D -a anatomical_rehoZ_mean_schaefer200x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer200x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer200x7/sub-01_ses-01_schaefer200x7_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -x /xcpEngine/atlas/schaefer400x17/schaefer400x17NodeIndex.1D -n /xcpEngine/atlas/schaefer400x17/schaefer400x17NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -n schaefer400x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_alff-quantifyAtlas_schaefer400x17_mean.1D -a anatomical_alff_mean_schaefer400x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -n schaefer400x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_alffZ-quantifyAtlas_schaefer400x17_mean.1D -a anatomical_alffZ_mean_schaefer400x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -n schaefer400x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_reho-quantifyAtlas_schaefer400x17_mean.1D -a anatomical_reho_mean_schaefer400x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -n schaefer400x17 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x17.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_mean_rehoZ-quantifyAtlas_schaefer400x17_mean.1D -a anatomical_rehoZ_mean_schaefer400x17 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x17_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x17/sub-01_ses-01_schaefer400x17_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -x /xcpEngine/atlas/schaefer400x7/schaefer400x7NodeIndex.1D -n /xcpEngine/atlas/schaefer400x7/schaefer400x7NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -n schaefer400x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_alff-quantifyAtlas_schaefer400x7_mean.1D -a anatomical_alff_mean_schaefer400x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -n schaefer400x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_alffZ-quantifyAtlas_schaefer400x7_mean.1D -a anatomical_alffZ_mean_schaefer400x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -n schaefer400x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_reho-quantifyAtlas_schaefer400x7_mean.1D -a anatomical_reho_mean_schaefer400x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -n schaefer400x7 -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_schaefer400x7.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_mean_rehoZ-quantifyAtlas_schaefer400x7_mean.1D -a anatomical_rehoZ_mean_schaefer400x7 -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_schaefer400x7_names.1D -o /out/sub-01/ses-01/roiquant/schaefer400x7/sub-01_ses-01_schaefer400x7_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -x /xcpEngine/atlas/global/globalNodeIndex.1D -n /xcpEngine/atlas/global/globalNodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -n global -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_alff-quantifyAtlas_global_mean.1D -a anatomical_alff_mean_global -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -n global -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_alffZ-quantifyAtlas_global_mean.1D -a anatomical_alffZ_mean_global -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -n global -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_reho-quantifyAtlas_global_mean.1D -a anatomical_reho_mean_global -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -n global -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_global.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_mean_rehoZ-quantifyAtlas_global_mean.1D -a anatomical_rehoZ_mean_global -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_global_names.1D -o /out/sub-01/ses-01/roiquant/global/sub-01_ses-01_global_mean_rehoZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/nodeCoverage.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -x /xcpEngine/atlas/segmentation3/segmentation3NodeIndex.1D -n /xcpEngine/atlas/segmentation3/segmentation3NodeNames.txt
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_alff.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_alff -d anatomical_alff -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -n segmentation -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_alff-quantifyAtlas_segmentation_mean.1D -a anatomical_alff_mean_segmentation -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_alff.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_alffZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_alffZ -d anatomical_alffZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -n segmentation -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -nzmean /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_alffZ-quantifyAtlas_segmentation_mean.1D -a anatomical_alffZ_mean_segmentation -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_alffZ.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_reho.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_reho -d anatomical_reho -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -n segmentation -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_reho-quantifyAtlas_segmentation_mean.1D -a anatomical_reho_mean_segmentation -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_reho.csv -p sub-01,ses-01
                             -   -   -
>> ${XCPEDIR}/utils/quantifyAtlas -v /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -s mean -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_rehoZ.csv -t /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_rehoZ -d anatomical_rehoZ -a /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -n segmentation -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -r /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -p sub-01,ses-01 -w 0
                             -   -   -
>> 3dROIstats -1DRformat -nomeanout -nobriklab -roisel /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_idx.1D -mask /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz -nzmean /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /out/sub-01/ses-01/sub-01_ses-01_atlas/sub-01_ses-01_segmentation.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> ${XCPEDIR}/utils/rs2rq.R -i /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_mean_rehoZ-quantifyAtlas_segmentation_mean.1D -a anatomical_rehoZ_mean_segmentation -n /tmp/sub-01_ses-01-roiquant-507335167~TEMP~_segmentation_names.1D -o /out/sub-01/ses-01/roiquant/segmentation/sub-01_ses-01_segmentation_mean_rehoZ.csv -p sub-01,ses-01

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗                IMAGE NORMALISATION MODULE                 ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/sub-01_ses-01.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/alff/sub-01_ses-01_alff.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_alffStd.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_alffZStd.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/alff/sub-01_ses-01_alffZ_sm6.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_alffZ_sm6Std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/alff/sub-01_ses-01_alff_sm6.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_alff_sm6Std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/regress/sub-01_ses-01_img_sm6.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_img_sm6Std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/prestats/sub-01_ses-01_mask.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_maskStd.nii.gz -n NearestNeighbor -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/prestats/sub-01_ses-01_referenceVolumeBrain.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/reho/sub-01_ses-01_reho.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_rehoStd.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_rehoZStd.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/reho/sub-01_ses-01_rehoZ_sm6.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_rehoZ_sm6Std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/reho/sub-01_ses-01_reho_sm6.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -o /out/sub-01/ses-01/norm/sub-01_ses-01_reho_sm6Std.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> fslmaths /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz -bin /tmp/sub-01_ses-01-norm-984238616~TEMP~-seq2std_mask.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/maskOverlap.R -m /tmp/sub-01_ses-01-norm-984238616~TEMP~-seq2std_mask.nii.gz -r /xcpEngine/space/MNI/MNI-2x2x2.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/regslicer -s /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz -t /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -i /tmp/sub-01_ses-01-norm-984238616~TEMP~ -o /out/sub-01/ses-01/norm/sub-01_ses-01_seq2std
                             -   -   -
>> slicer /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz /xcpEngine/space/MNI/MNI-2x2x2.nii.gz -s 2 -x 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sla.png -x 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slb.png -x 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slc.png -x 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sld.png -y 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sle.png -y 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slf.png -y 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slg.png -y 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slh.png -z 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sli.png -z 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slj.png -z 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slk.png -z 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sll.png
                             -   -   -
>> pngappend /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sla.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slb.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slc.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sld.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sle.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slf.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slg.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slh.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sli.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slj.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slk.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sll.png /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_source2target1.png
                             -   -   -
>> slicer /xcpEngine/space/MNI/MNI-2x2x2.nii.gz /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz -s 2 -x 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sla.png -x 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slb.png -x 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slc.png -x 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sld.png -y 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sle.png -y 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slf.png -y 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slg.png -y 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slh.png -z 0.35 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sli.png -z 0.45 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slj.png -z 0.55 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slk.png -z 0.65 /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sll.png
                             -   -   -
>> pngappend /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sla.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slb.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slc.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sld.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sle.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slf.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slg.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slh.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sli.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slj.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_slk.png + /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_sll.png /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_source2target2.png
                             -   -   -
>> pngappend /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_source2target1.png - /tmp/sub-01_ses-01-norm-984238616~TEMP~-regslicer_source2target2.png /out/sub-01/ses-01/norm/sub-01_ses-01_seq2std.png

###################################################################
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
#                                                                 #
#  ⊗           FUNCTIONAL QUALITY ASSESSMENT MODULE            ⊗  #
#                                                                 #
#  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  ⊗  #
###################################################################

                             -   -   -
>> ${XCPEDIR}/utils/unique.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/layerLabels -l /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -i /tmp/sub-01_ses-01-qcfc-483155388~TEMP~ -o /out/sub-01/ses-01/qcfc/sub-01_ses-01_depthMap.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/unique.R -i /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -thr 1 -uthr 1 -div 1 -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz
                             -   -   -
>> ImageMath 3 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz MaurerDistance /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz -mul /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/val2pct.R -i /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz -m /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz -o /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz -mul 100 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz -mul 100 -add /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-1.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -thr 2 -uthr 2 -div 2 -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz
                             -   -   -
>> ImageMath 3 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz MaurerDistance /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz -mul /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/val2pct.R -i /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz -m /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz -o /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz -mul 200 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz -mul 100 -add /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-2.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/prestats/sub-01_ses-01_segmentation.nii.gz -thr 3 -uthr 3 -div 3 -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz
                             -   -   -
>> ImageMath 3 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz MaurerDistance /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz -sub 1 -mul -1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz -mul /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz
                             -   -   -
>> ${XCPEDIR}/utils/val2pct.R -i /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz -m /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz -o /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz -mul 300 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz -mul 100 -add /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-class-3.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-1.nii.gz -add /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-2.nii.gz -add /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-layerLabels-depth-3.nii.gz /out/sub-01/ses-01/qcfc/sub-01_ses-01_depthMap.nii.gz
                             -   -   -
>> 3dresample -dxyz 6 6 6 -prefix /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-pp-rs.nii.gz -inset /out/sub-01/ses-01/prestats/sub-01_ses-01_preprocessed.nii.gz -rmode Li
                             -   -   -
>> 3dresample -dxyz 6 6 6 -prefix /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dn-rs.nii.gz -inset /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dn.nii.gz -rmode Li
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dn.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> 3dresample -dxyz 6 6 6 -prefix /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-onion-rs.nii.gz -inset /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-onion.nii.gz -rmode NN
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-onion.nii.gz to FLOAT32
     Warnings of this type will be muted for this session.
     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
                             -   -   -
>> fslval /data/sub-01/ses-01/func/sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz pixdim4
                             -   -   -
>> ${XCPEDIR}/utils/voxts.R -i /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-pp-rs.nii.gz,/tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dn-rs.nii.gz -r /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-onion-rs.nii.gz -o /out/sub-01/ses-01/qcfc/sub-01_ses-01_voxts.png -t DV:/tmp/sub-01_ses-01-qcfc-483155388~TEMP~_dvar.1D:1.5,RMS:/tmp/sub-01_ses-01-qcfc-483155388~TEMP~_rms1.1D:.207500000,FD:/tmp/sub-01_ses-01-qcfc-483155388~TEMP~_fd.1D:.417500000 -n /xcpEngine/atlas/segmentation3/segmentation3NodeNames.txt
                             -   -   -
>> antsApplyTransforms -e 3 -d 3 -i /out/sub-01/ses-01/norm/sub-01_ses-01_referenceVolumeBrainStd.nii.gz -r /out/sub-01/ses-01/prestats/sub-01_ses-01_struct.nii.gz -o /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-referenceVolumeBrain.nii.gz -t /xcpEngine/utils/oneratiotransform.txt
                             -   -   -
>> ${XCPEDIR}/utils/dvars -i /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -o /out/sub-01/ses-01/qcfc/sub-01_ses-01_dvars -s /tmp/sub-01_ses-01-qcfc-483155388~TEMP~ -d 1 -b /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-referenceVolumeBrain.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -Tperc 25 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-lowerQuartile.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -Tperc 75 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-upperQuartile.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-upperQuartile.nii.gz -sub /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-lowerQuartile.nii.gz -div 1.34897950039 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-temporalSD.nii.gz
                             -   -   -
>> fslmaths /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz -Tar1 /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-temporalAR.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-temporalAR.nii.gz -mul -1 -add 1 -mul 2 -sqrt -mul /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-temporalSD.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-predictedSD.nii.gz
                             -   -   -
>> fslstats /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-predictedSD.nii.gz -k /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-referenceVolumeBrain.nii.gz -M
                             -   -   -
>> fslnvols /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz
                             -   -   -
>> fslroi /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t-1.nii.gz 0 243
                             -   -   -
>> fslroi /out/sub-01/ses-01/regress/sub-01_ses-01_residualised.nii.gz /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t.nii.gz 1 244
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t.nii.gz -sub /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t-1.nii.gz -sqr /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-tdiff-sq.nii.gz
                             -   -   -
>> fslmaths /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t.nii.gz -sub /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-t-1.nii.gz -div /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-predictedSD.nii.gz -sqr /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-tdiff-vox-std.nii.gz
                             -   -   -
>> fslstats -t /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-tdiff-sq.nii.gz -k /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-referenceVolumeBrain.nii.gz -M
                             -   -   -
>> fslstats -t /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-dvars-tdiff-vox-std.nii.gz -k /tmp/sub-01_ses-01-qcfc-483155388~TEMP~-referenceVolumeBrain.nii.gz -M
                             -   -   -
>> ${XCPEDIR}/utils/1dTool.R -i /out/sub-01/ses-01/qcfc/sub-01_ses-01_dvars-std.1D -o mean -f /out/sub-01/ses-01/qcfc/sub-01_ses-01_dvars-mean.txt
                             -   -   -
>> ${XCPEDIR}/utils/featureCorrelation.R -i /out/sub-01/ses-01/qcfc/sub-01_ses-01_dvars-std.1D,/tmp/sub-01_ses-01-qcfc-483155388~TEMP~_rms.1D

Runtime Information I run the software using the Docker.

a3sha2 commented 3 years ago

HI @YukiSakai1209 pls can you check the regress folder? Let me know if you can find cifti and/or gifti files . if not, try to run the latest docker image pennbbl/xcpengine:latest

YukiSakai1209 commented 3 years ago

Thank you very much for your comment. I cannot find cifti and gifti files in the regress folder. I have just started the analysis using the latest docker image pennbbl/xcpengine:latest. After I finished, I will report the results.

YukiSakai1209 commented 3 years ago

Although I used the latest docker image pennbbl/xcpengine:latest, outputs seemed to be similar with 1.2.3 (no resisualized cifti outputs). Inputs (outputs from fMRIprep 20.2.1) and outputs from pennbbl/xcpengine:latest were below.

Inputs

data/sub-01
├── anat
│   ├── sub-01_desc-aparcaseg_dseg.nii.gz
│   ├── sub-01_desc-aseg_dseg.nii.gz
│   ├── sub-01_desc-brain_mask.json
│   ├── sub-01_desc-brain_mask.nii.gz
│   ├── sub-01_desc-preproc_T1w.json
│   ├── sub-01_desc-preproc_T1w.nii.gz
│   ├── sub-01_dseg.nii.gz
│   ├── sub-01_from-fsnative_to-T1w_mode-image_xfm.txt
│   ├── sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
│   ├── sub-01_from-MNI152NLin6Asym_to-T1w_mode-image_xfm.h5
│   ├── sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
│   ├── sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
│   ├── sub-01_from-T1w_to-MNI152NLin6Asym_mode-image_xfm.h5
│   ├── sub-01_hemi-L_inflated.surf.gii
│   ├── sub-01_hemi-L_midthickness.surf.gii
│   ├── sub-01_hemi-L_pial.surf.gii
│   ├── sub-01_hemi-L_smoothwm.surf.gii
│   ├── sub-01_hemi-R_inflated.surf.gii
│   ├── sub-01_hemi-R_midthickness.surf.gii
│   ├── sub-01_hemi-R_pial.surf.gii
│   ├── sub-01_hemi-R_smoothwm.surf.gii
│   ├── sub-01_label-CSF_probseg.nii.gz
│   ├── sub-01_label-GM_probseg.nii.gz
│   ├── sub-01_label-WM_probseg.nii.gz
│   ├── sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
│   ├── sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│   ├── sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.json
│   ├── sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
│   ├── sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz
│   ├── sub-01_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
│   ├── sub-01_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
│   └── sub-01_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
├── figures
│   ├── sub-01_desc-conform_T1w.html
│   ├── sub-01_desc-reconall_T1w.svg
│   ├── sub-01_dseg.svg
│   ├── sub-01_ses-01_desc-about_T1w.html
│   ├── sub-01_ses-01_desc-summary_T1w.html
│   ├── sub-01_ses-01_task-rest_desc-aroma_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-bbregister_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-carpetplot_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-compcorvar_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-confoundcorr_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-rois_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-sdc_bold.svg
│   ├── sub-01_ses-01_task-rest_desc-summary_bold.html
│   ├── sub-01_ses-01_task-rest_desc-validation_bold.html
│   ├── sub-01_ses-02_task-rest_desc-aroma_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-bbregister_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-carpetplot_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-compcorvar_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-confoundcorr_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-rois_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-sdc_bold.svg
│   ├── sub-01_ses-02_task-rest_desc-summary_bold.html
│   ├── sub-01_ses-02_task-rest_desc-validation_bold.html
│   ├── sub-01_ses-03_task-rest_desc-aroma_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-bbregister_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-carpetplot_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-compcorvar_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-confoundcorr_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-rois_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-sdc_bold.svg
│   ├── sub-01_ses-03_task-rest_desc-summary_bold.html
│   ├── sub-01_ses-03_task-rest_desc-validation_bold.html
│   ├── sub-01_ses-04_task-rest_desc-aroma_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-bbregister_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-carpetplot_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-compcorvar_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-confoundcorr_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-rois_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-sdc_bold.svg
│   ├── sub-01_ses-04_task-rest_desc-summary_bold.html
│   ├── sub-01_ses-04_task-rest_desc-validation_bold.html
│   ├── sub-01_space-MNI152NLin2009cAsym_T1w.svg
│   └── sub-01_space-MNI152NLin6Asym_T1w.svg
├── log
│   └── 20201120-123009_e00103f3-dc8e-4bbb-a3cc-b3cf118fbdb0
│       └── fmriprep.toml
├── ses-01
│   ├── anat
│   │   └── sub-01_ses-01_from-orig_to-T1w_mode-image_xfm.txt
│   └── func
│       ├── sub-01_ses-01_task-rest_AROMAnoiseICs.csv
│       ├── sub-01_ses-01_task-rest_desc-confounds_timeseries.json
│       ├── sub-01_ses-01_task-rest_desc-confounds_timeseries.tsv
│       ├── sub-01_ses-01_task-rest_desc-MELODIC_mixing.tsv
│       ├── sub-01_ses-01_task-rest_from-scanner_to-T1w_mode-image_xfm.txt
│       ├── sub-01_ses-01_task-rest_from-T1w_to-scanner_mode-image_xfm.txt
│       ├── sub-01_ses-01_task-rest_space-fsLR_den-91k_bold.dtseries.json
│       ├── sub-01_ses-01_task-rest_space-fsLR_den-91k_bold.dtseries.nii
│       ├── sub-01_ses-01_task-rest_space-fsLR_den-91k_bold.json
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.json
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.json
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
│       ├── sub-01_ses-01_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
│       └── sub-01_ses-01_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
├── ses-02
│   ├── anat
│   │   └── sub-01_ses-02_from-orig_to-T1w_mode-image_xfm.txt
│   └── func
│       ├── sub-01_ses-02_task-rest_AROMAnoiseICs.csv
│       ├── sub-01_ses-02_task-rest_desc-confounds_timeseries.json
│       ├── sub-01_ses-02_task-rest_desc-confounds_timeseries.tsv
│       ├── sub-01_ses-02_task-rest_desc-MELODIC_mixing.tsv
│       ├── sub-01_ses-02_task-rest_from-scanner_to-T1w_mode-image_xfm.txt
│       ├── sub-01_ses-02_task-rest_from-T1w_to-scanner_mode-image_xfm.txt
│       ├── sub-01_ses-02_task-rest_space-fsLR_den-91k_bold.dtseries.json
│       ├── sub-01_ses-02_task-rest_space-fsLR_den-91k_bold.dtseries.nii
│       ├── sub-01_ses-02_task-rest_space-fsLR_den-91k_bold.json
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.json
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.json
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
│       ├── sub-01_ses-02_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
│       └── sub-01_ses-02_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
├── ses-03
│   ├── anat
│   │   └── sub-01_ses-03_from-orig_to-T1w_mode-image_xfm.txt
│   └── func
│       ├── sub-01_ses-03_task-rest_AROMAnoiseICs.csv
│       ├── sub-01_ses-03_task-rest_desc-confounds_timeseries.json
│       ├── sub-01_ses-03_task-rest_desc-confounds_timeseries.tsv
│       ├── sub-01_ses-03_task-rest_desc-MELODIC_mixing.tsv
│       ├── sub-01_ses-03_task-rest_from-scanner_to-T1w_mode-image_xfm.txt
│       ├── sub-01_ses-03_task-rest_from-T1w_to-scanner_mode-image_xfm.txt
│       ├── sub-01_ses-03_task-rest_space-fsLR_den-91k_bold.dtseries.json
│       ├── sub-01_ses-03_task-rest_space-fsLR_den-91k_bold.dtseries.nii
│       ├── sub-01_ses-03_task-rest_space-fsLR_den-91k_bold.json
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.json
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.json
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
│       ├── sub-01_ses-03_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
│       └── sub-01_ses-03_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
└── ses-04
    ├── anat
    │   └── sub-01_ses-04_from-orig_to-T1w_mode-image_xfm.txt
    └── func
        ├── sub-01_ses-04_task-rest_AROMAnoiseICs.csv
        ├── sub-01_ses-04_task-rest_desc-confounds_timeseries.json
        ├── sub-01_ses-04_task-rest_desc-confounds_timeseries.tsv
        ├── sub-01_ses-04_task-rest_desc-MELODIC_mixing.tsv
        ├── sub-01_ses-04_task-rest_from-scanner_to-T1w_mode-image_xfm.txt
        ├── sub-01_ses-04_task-rest_from-T1w_to-scanner_mode-image_xfm.txt
        ├── sub-01_ses-04_task-rest_space-fsLR_den-91k_bold.dtseries.json
        ├── sub-01_ses-04_task-rest_space-fsLR_den-91k_bold.dtseries.nii
        ├── sub-01_ses-04_task-rest_space-fsLR_den-91k_bold.json
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_boldref.nii.gz
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.json
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.json
        ├── sub-01_ses-04_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
        ├── sub-01_ses-04_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
        └── sub-01_ses-04_task-rest_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz

16 directories, 152 files

Outputs

data/xcpOutput1.2.3_36p_despike_latest_test
├── group
│   ├── anatomical_quality.csv
│   ├── atlas.json
│   ├── dependencies
│   │   └── fc_root_202011221212_pipelineDescription.json
│   ├── error
│   ├── log
│   │   └── fc_root_202011221212_LOG-process
│   ├── n4_audit.csv
│   ├── n4_quality.csv
│   ├── qcfc
│   │   ├── anatomical_node_distance_power264.txt
│   │   ├── anatomical_QC-FC_absMedCor_power264.txt
│   │   ├── anatomical_QC-FC_correlation_power264.svg
│   │   ├── anatomical_QC-FC_correlation_power264_thr.txt
│   │   ├── anatomical_QC-FC_correlation_power264.txt
│   │   ├── anatomical_QC-FC_distanceDependence_power264.svg
│   │   ├── anatomical_QC-FC_distanceDependence_power264.txt
│   │   ├── anatomical_QC-FC_nSigEdges_power264.txt
│   │   └── anatomical_QC-FC_pctSigEdges_power264.txt
│   └── roiquant
│       ├── aal116
│       │   ├── anatomicalAal116RegionalMeanAlff.csv
│       │   ├── anatomicalAal116RegionalMeanAlffZ.csv
│       │   ├── anatomicalAal116RegionalMeanReho.csv
│       │   └── anatomicalAal116RegionalMeanRehoZ.csv
│       ├── desikanKilliany
│       │   ├── anatomicalDesikanKillianyRegionalMeanAlff.csv
│       │   ├── anatomicalDesikanKillianyRegionalMeanAlffZ.csv
│       │   ├── anatomicalDesikanKillianyRegionalMeanReho.csv
│       │   └── anatomicalDesikanKillianyRegionalMeanRehoZ.csv
│       ├── glasser360
│       │   ├── anatomicalGlasser360RegionalMeanAlff.csv
│       │   ├── anatomicalGlasser360RegionalMeanAlffZ.csv
│       │   ├── anatomicalGlasser360RegionalMeanReho.csv
│       │   └── anatomicalGlasser360RegionalMeanRehoZ.csv
│       ├── gordon333
│       │   ├── anatomicalGordon333RegionalMeanAlff.csv
│       │   ├── anatomicalGordon333RegionalMeanAlffZ.csv
│       │   ├── anatomicalGordon333RegionalMeanReho.csv
│       │   └── anatomicalGordon333RegionalMeanRehoZ.csv
│       ├── HarvardOxford
│       │   ├── anatomicalHarvardOxfordRegionalMeanAlff.csv
│       │   ├── anatomicalHarvardOxfordRegionalMeanAlffZ.csv
│       │   ├── anatomicalHarvardOxfordRegionalMeanReho.csv
│       │   └── anatomicalHarvardOxfordRegionalMeanRehoZ.csv
│       ├── power264
│       │   ├── anatomicalPower264RegionalMeanAlff.csv
│       │   ├── anatomicalPower264RegionalMeanAlffZ.csv
│       │   ├── anatomicalPower264RegionalMeanReho.csv
│       │   └── anatomicalPower264RegionalMeanRehoZ.csv
│       ├── schaefer100
│       ├── schaefer100x17
│       │   ├── anatomicalSchaefer100x17RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer100x17RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer100x17RegionalMeanReho.csv
│       │   └── anatomicalSchaefer100x17RegionalMeanRehoZ.csv
│       ├── schaefer100x7
│       │   ├── anatomicalSchaefer100x7RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer100x7RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer100x7RegionalMeanReho.csv
│       │   └── anatomicalSchaefer100x7RegionalMeanRehoZ.csv
│       ├── schaefer200
│       ├── schaefer200x17
│       │   ├── anatomicalSchaefer200x17RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer200x17RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer200x17RegionalMeanReho.csv
│       │   └── anatomicalSchaefer200x17RegionalMeanRehoZ.csv
│       ├── schaefer200x7
│       │   ├── anatomicalSchaefer200x7RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer200x7RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer200x7RegionalMeanReho.csv
│       │   └── anatomicalSchaefer200x7RegionalMeanRehoZ.csv
│       ├── schaefer400
│       ├── schaefer400x17
│       │   ├── anatomicalSchaefer400x17RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer400x17RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer400x17RegionalMeanReho.csv
│       │   └── anatomicalSchaefer400x17RegionalMeanRehoZ.csv
│       ├── schaefer400x7
│       │   ├── anatomicalSchaefer400x7RegionalMeanAlff.csv
│       │   ├── anatomicalSchaefer400x7RegionalMeanAlffZ.csv
│       │   ├── anatomicalSchaefer400x7RegionalMeanReho.csv
│       │   └── anatomicalSchaefer400x7RegionalMeanRehoZ.csv
│       └── sharma
└── sub-01
    ├── ses-01
    │   ├── alff
    │   │   ├── sub-01_ses-01_alff.nii.gz
    │   │   └── sub-01_ses-01_alffZ.nii.gz
    │   ├── confound2
    │   │   ├── mc
    │   │   │   ├── sub-01_ses-01_dvars-mean.txt
    │   │   │   ├── sub-01_ses-01_dvars-raw.1D
    │   │   │   ├── sub-01_ses-01_dvars-std.1D
    │   │   │   ├── sub-01_ses-01_dvars-vox.1D
    │   │   │   ├── sub-01_ses-01_fd.1D
    │   │   │   ├── sub-01_ses-01_motionDVCorr.txt
    │   │   │   ├── sub-01_ses-01_realignment.1D
    │   │   │   ├── sub-01_ses-01_relMaxRMS.txt
    │   │   │   ├── sub-01_ses-01_relMeanRMS.txt
    │   │   │   ├── sub-01_ses-01_relRMS.1D
    │   │   │   ├── sub-01_ses-01_spatial_sd.1D
    │   │   │   ├── sub-01_ses-01_tmask.1D
    │   │   │   ├── sub-01_ses-01_ts_outliers.1D
    │   │   │   └── sub-01_ses-01_ts_quality_index.1D
    │   │   ├── sub-01_ses-01_confmat.1D
    │   │   ├── sub-01_ses-01_csf.1D
    │   │   ├── sub-01_ses-01_gsr.1D
    │   │   ├── sub-01_ses-01_modelParameterCount.txt
    │   │   └── sub-01_ses-01_wm.1D
    │   ├── fcon
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-01_aal116.net
    │   │   │   ├── sub-01_ses-01_aal116_network.txt
    │   │   │   └── sub-01_ses-01_aal116_ts.1D
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-01_desikanKilliany_missing.txt
    │   │   │   ├── sub-01_ses-01_desikanKilliany.net
    │   │   │   ├── sub-01_ses-01_desikanKilliany_network.txt
    │   │   │   └── sub-01_ses-01_desikanKilliany_ts.1D
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-01_glasser360_missing.txt
    │   │   │   ├── sub-01_ses-01_glasser360.net
    │   │   │   ├── sub-01_ses-01_glasser360_network.txt
    │   │   │   └── sub-01_ses-01_glasser360_ts.1D
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-01_gordon333_missing.txt
    │   │   │   ├── sub-01_ses-01_gordon333.net
    │   │   │   ├── sub-01_ses-01_gordon333_network.txt
    │   │   │   └── sub-01_ses-01_gordon333_ts.1D
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-01_HarvardOxford.net
    │   │   │   ├── sub-01_ses-01_HarvardOxford_network.txt
    │   │   │   └── sub-01_ses-01_HarvardOxford_ts.1D
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-01_power264.net
    │   │   │   ├── sub-01_ses-01_power264_network.txt
    │   │   │   └── sub-01_ses-01_power264_ts.1D
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-01_schaefer100x17.net
    │   │   │   ├── sub-01_ses-01_schaefer100x17_network.txt
    │   │   │   └── sub-01_ses-01_schaefer100x17_ts.1D
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-01_schaefer100x7.net
    │   │   │   ├── sub-01_ses-01_schaefer100x7_network.txt
    │   │   │   └── sub-01_ses-01_schaefer100x7_ts.1D
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-01_schaefer200x17.net
    │   │   │   ├── sub-01_ses-01_schaefer200x17_network.txt
    │   │   │   └── sub-01_ses-01_schaefer200x17_ts.1D
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-01_schaefer200x7.net
    │   │   │   ├── sub-01_ses-01_schaefer200x7_network.txt
    │   │   │   └── sub-01_ses-01_schaefer200x7_ts.1D
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-01_schaefer400x17.net
    │   │   │   ├── sub-01_ses-01_schaefer400x17_network.txt
    │   │   │   └── sub-01_ses-01_schaefer400x17_ts.1D
    │   │   └── schaefer400x7
    │   │       ├── sub-01_ses-01_schaefer400x7.net
    │   │       ├── sub-01_ses-01_schaefer400x7_network.txt
    │   │       └── sub-01_ses-01_schaefer400x7_ts.1D
    │   ├── figures
    │   │   ├── sub-01_ses-01_alff.svg
    │   │   ├── sub-01_ses-01_corrplot.svg
    │   │   ├── sub-01_ses-01_normalization.svg
    │   │   ├── sub-01_ses-01_prestats.svg
    │   │   ├── sub-01_ses-01_qcfc.svg
    │   │   ├── sub-01_ses-01_registration.svg
    │   │   ├── sub-01_ses-01_reho.svg
    │   │   └── sub-01_ses-01_voxts.png
    │   ├── norm
    │   │   ├── sub-01_ses-01_alffStd.nii.gz
    │   │   ├── sub-01_ses-01_alffZStd.nii.gz
    │   │   ├── sub-01_ses-01_maskStd.nii.gz
    │   │   ├── sub-01_ses-01_normCoverage.txt
    │   │   ├── sub-01_ses-01_normCrossCorr.txt
    │   │   ├── sub-01_ses-01_normDice.txt
    │   │   ├── sub-01_ses-01_normJaccard.txt
    │   │   ├── sub-01_ses-01_referenceVolumeBrainStd.nii.gz
    │   │   ├── sub-01_ses-01_rehoStd.nii.gz
    │   │   ├── sub-01_ses-01_rehoZStd.nii.gz
    │   │   ├── sub-01_ses-01_seq2std.png
    │   │   ├── sub-01_ses-01_std.nii.gz
    │   │   └── template.nii.gz
    │   ├── prestats
    │   │   ├── mc
    │   │   ├── sub-01_ses-01_coregCoverage.txt
    │   │   ├── sub-01_ses-01_coregCrossCorr.txt
    │   │   ├── sub-01_ses-01_coregDice.txt
    │   │   ├── sub-01_ses-01_coregJaccard.txt
    │   │   ├── sub-01_ses-01_fmriconf.json
    │   │   ├── sub-01_ses-01_fmriconf.tsv
    │   │   ├── sub-01_ses-01_mask.nii.gz
    │   │   ├── sub-01_ses-01_referenceVolumeBrain.nii.gz
    │   │   └── sub-01_ses-01_referenceVolume.nii.gz
    │   ├── qcfc
    │   │   ├── sub-01_ses-01_dvars-mean.txt
    │   │   ├── sub-01_ses-01_dvars-raw.1D
    │   │   ├── sub-01_ses-01_dvars-std.1D
    │   │   ├── sub-01_ses-01_dvars-vox.1D
    │   │   ├── sub-01_ses-01_motionDVCorr.txt
    │   │   └── sub-01_ses-01_tdof.txt
    │   ├── regress
    │   │   ├── sub-01_ses-01_confcor.txt
    │   │   ├── sub-01_ses-01_confmat.1D
    │   │   ├── sub-01_ses-01_nVolumesCensored.txt
    │   │   └── sub-01_ses-01_residualised.nii.gz
    │   ├── reho
    │   │   ├── sub-01_ses-01_reho.nii.gz
    │   │   └── sub-01_ses-01_rehoZ.nii.gz
    │   ├── roiquant
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-01_aal116_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_aal116_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_aal116_mean_reho.csv
    │   │   │   └── sub-01_ses-01_aal116_mean_rehoZ.csv
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-01_desikanKilliany_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_desikanKilliany_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_desikanKilliany_mean_reho.csv
    │   │   │   └── sub-01_ses-01_desikanKilliany_mean_rehoZ.csv
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-01_glasser360_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_glasser360_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_glasser360_mean_reho.csv
    │   │   │   └── sub-01_ses-01_glasser360_mean_rehoZ.csv
    │   │   ├── global
    │   │   │   ├── sub-01_ses-01_global_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_global_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_global_mean_reho.csv
    │   │   │   └── sub-01_ses-01_global_mean_rehoZ.csv
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-01_gordon333_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_gordon333_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_gordon333_mean_reho.csv
    │   │   │   └── sub-01_ses-01_gordon333_mean_rehoZ.csv
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-01_HarvardOxford_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_HarvardOxford_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_HarvardOxford_mean_reho.csv
    │   │   │   └── sub-01_ses-01_HarvardOxford_mean_rehoZ.csv
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-01_power264_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_power264_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_power264_mean_reho.csv
    │   │   │   └── sub-01_ses-01_power264_mean_rehoZ.csv
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-01_schaefer100x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer100x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer100x17_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer100x17_mean_rehoZ.csv
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-01_schaefer100x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer100x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer100x7_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer100x7_mean_rehoZ.csv
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-01_schaefer200x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer200x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer200x17_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer200x17_mean_rehoZ.csv
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-01_schaefer200x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer200x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer200x7_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer200x7_mean_rehoZ.csv
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-01_schaefer400x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer400x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer400x17_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer400x17_mean_rehoZ.csv
    │   │   ├── schaefer400x7
    │   │   │   ├── sub-01_ses-01_schaefer400x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-01_schaefer400x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-01_schaefer400x7_mean_reho.csv
    │   │   │   └── sub-01_ses-01_schaefer400x7_mean_rehoZ.csv
    │   │   └── segmentation
    │   │       ├── sub-01_ses-01_segmentation_mean_alff.csv
    │   │       ├── sub-01_ses-01_segmentation_mean_alffZ.csv
    │   │       ├── sub-01_ses-01_segmentation_mean_reho.csv
    │   │       └── sub-01_ses-01_segmentation_mean_rehoZ.csv
    │   ├── sub-01_ses-01_atlas
    │   │   ├── sub-01_ses-01_aal116.nii.gz
    │   │   ├── sub-01_ses-01_atlas.json
    │   │   ├── sub-01_ses-01_desikanKilliany.nii.gz
    │   │   ├── sub-01_ses-01_glasser360.nii.gz
    │   │   ├── sub-01_ses-01_global.nii.gz -> ../prestats/sub-01_ses-01_mask.nii.gz
    │   │   ├── sub-01_ses-01_gordon333.nii.gz
    │   │   ├── sub-01_ses-01_HarvardOxford.nii.gz
    │   │   ├── sub-01_ses-01_power264.nii.gz
    │   │   ├── sub-01_ses-01_schaefer100x17.nii.gz
    │   │   ├── sub-01_ses-01_schaefer100x7.nii.gz
    │   │   ├── sub-01_ses-01_schaefer200x17.nii.gz
    │   │   ├── sub-01_ses-01_schaefer200x7.nii.gz
    │   │   ├── sub-01_ses-01_schaefer400x17.nii.gz
    │   │   ├── sub-01_ses-01_schaefer400x7.nii.gz
    │   │   └── sub-01_ses-01_segmentation.nii.gz -> ../prestats/sub-01_ses-01_segmentation.nii.gz
    │   ├── sub-01_ses-01_derivatives.json
    │   ├── sub-01_ses-01_derivatives-sub-01_ses-01_anatomical.json
    │   ├── sub-01_ses-01.dsn
    │   ├── sub-01_ses-01_logs
    │   │   ├── fc_root_202011221212_sub-01_ses-01LOG-process
    │   │   └── sub-01_ses-01_audit.csv
    │   ├── sub-01_ses-01-nFlags.1D
    │   ├── sub-01_ses-01_quality.csv
    │   ├── sub-01_ses-01_report.html
    │   └── sub-01_ses-01_spaces.json
    ├── ses-02
    │   ├── alff
    │   │   ├── sub-01_ses-02_alff.nii.gz
    │   │   └── sub-01_ses-02_alffZ.nii.gz
    │   ├── confound2
    │   │   ├── mc
    │   │   │   ├── sub-01_ses-02_dvars-mean.txt
    │   │   │   ├── sub-01_ses-02_dvars-raw.1D
    │   │   │   ├── sub-01_ses-02_dvars-std.1D
    │   │   │   ├── sub-01_ses-02_dvars-vox.1D
    │   │   │   ├── sub-01_ses-02_fd.1D
    │   │   │   ├── sub-01_ses-02_motionDVCorr.txt
    │   │   │   ├── sub-01_ses-02_realignment.1D
    │   │   │   ├── sub-01_ses-02_relMaxRMS.txt
    │   │   │   ├── sub-01_ses-02_relMeanRMS.txt
    │   │   │   ├── sub-01_ses-02_relRMS.1D
    │   │   │   ├── sub-01_ses-02_spatial_sd.1D
    │   │   │   ├── sub-01_ses-02_tmask.1D
    │   │   │   ├── sub-01_ses-02_ts_outliers.1D
    │   │   │   └── sub-01_ses-02_ts_quality_index.1D
    │   │   ├── sub-01_ses-02_confmat.1D
    │   │   ├── sub-01_ses-02_csf.1D
    │   │   ├── sub-01_ses-02_gsr.1D
    │   │   ├── sub-01_ses-02_modelParameterCount.txt
    │   │   └── sub-01_ses-02_wm.1D
    │   ├── fcon
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-02_aal116.net
    │   │   │   ├── sub-01_ses-02_aal116_network.txt
    │   │   │   └── sub-01_ses-02_aal116_ts.1D
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-02_desikanKilliany_missing.txt
    │   │   │   ├── sub-01_ses-02_desikanKilliany.net
    │   │   │   ├── sub-01_ses-02_desikanKilliany_network.txt
    │   │   │   └── sub-01_ses-02_desikanKilliany_ts.1D
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-02_glasser360_missing.txt
    │   │   │   ├── sub-01_ses-02_glasser360.net
    │   │   │   ├── sub-01_ses-02_glasser360_network.txt
    │   │   │   └── sub-01_ses-02_glasser360_ts.1D
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-02_gordon333_missing.txt
    │   │   │   ├── sub-01_ses-02_gordon333.net
    │   │   │   ├── sub-01_ses-02_gordon333_network.txt
    │   │   │   └── sub-01_ses-02_gordon333_ts.1D
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-02_HarvardOxford.net
    │   │   │   ├── sub-01_ses-02_HarvardOxford_network.txt
    │   │   │   └── sub-01_ses-02_HarvardOxford_ts.1D
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-02_power264.net
    │   │   │   ├── sub-01_ses-02_power264_network.txt
    │   │   │   └── sub-01_ses-02_power264_ts.1D
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-02_schaefer100x17.net
    │   │   │   ├── sub-01_ses-02_schaefer100x17_network.txt
    │   │   │   └── sub-01_ses-02_schaefer100x17_ts.1D
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-02_schaefer100x7.net
    │   │   │   ├── sub-01_ses-02_schaefer100x7_network.txt
    │   │   │   └── sub-01_ses-02_schaefer100x7_ts.1D
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-02_schaefer200x17.net
    │   │   │   ├── sub-01_ses-02_schaefer200x17_network.txt
    │   │   │   └── sub-01_ses-02_schaefer200x17_ts.1D
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-02_schaefer200x7.net
    │   │   │   ├── sub-01_ses-02_schaefer200x7_network.txt
    │   │   │   └── sub-01_ses-02_schaefer200x7_ts.1D
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-02_schaefer400x17.net
    │   │   │   ├── sub-01_ses-02_schaefer400x17_network.txt
    │   │   │   └── sub-01_ses-02_schaefer400x17_ts.1D
    │   │   └── schaefer400x7
    │   │       ├── sub-01_ses-02_schaefer400x7.net
    │   │       ├── sub-01_ses-02_schaefer400x7_network.txt
    │   │       └── sub-01_ses-02_schaefer400x7_ts.1D
    │   ├── figures
    │   │   ├── sub-01_ses-02_alff.svg
    │   │   ├── sub-01_ses-02_corrplot.svg
    │   │   ├── sub-01_ses-02_normalization.svg
    │   │   ├── sub-01_ses-02_prestats.svg
    │   │   ├── sub-01_ses-02_qcfc.svg
    │   │   ├── sub-01_ses-02_registration.svg
    │   │   ├── sub-01_ses-02_reho.svg
    │   │   └── sub-01_ses-02_voxts.png
    │   ├── norm
    │   │   ├── sub-01_ses-02_alffStd.nii.gz
    │   │   ├── sub-01_ses-02_alffZStd.nii.gz
    │   │   ├── sub-01_ses-02_maskStd.nii.gz
    │   │   ├── sub-01_ses-02_normCoverage.txt
    │   │   ├── sub-01_ses-02_normCrossCorr.txt
    │   │   ├── sub-01_ses-02_normDice.txt
    │   │   ├── sub-01_ses-02_normJaccard.txt
    │   │   ├── sub-01_ses-02_referenceVolumeBrainStd.nii.gz
    │   │   ├── sub-01_ses-02_rehoStd.nii.gz
    │   │   ├── sub-01_ses-02_rehoZStd.nii.gz
    │   │   ├── sub-01_ses-02_seq2std.png
    │   │   ├── sub-01_ses-02_std.nii.gz
    │   │   └── template.nii.gz
    │   ├── prestats
    │   │   ├── mc
    │   │   ├── sub-01_ses-02_coregCoverage.txt
    │   │   ├── sub-01_ses-02_coregCrossCorr.txt
    │   │   ├── sub-01_ses-02_coregDice.txt
    │   │   ├── sub-01_ses-02_coregJaccard.txt
    │   │   ├── sub-01_ses-02_fmriconf.json
    │   │   ├── sub-01_ses-02_fmriconf.tsv
    │   │   ├── sub-01_ses-02_mask.nii.gz
    │   │   ├── sub-01_ses-02_referenceVolumeBrain.nii.gz
    │   │   └── sub-01_ses-02_referenceVolume.nii.gz
    │   ├── qcfc
    │   │   ├── sub-01_ses-02_dvars-mean.txt
    │   │   ├── sub-01_ses-02_dvars-raw.1D
    │   │   ├── sub-01_ses-02_dvars-std.1D
    │   │   ├── sub-01_ses-02_dvars-vox.1D
    │   │   ├── sub-01_ses-02_motionDVCorr.txt
    │   │   └── sub-01_ses-02_tdof.txt
    │   ├── regress
    │   │   ├── sub-01_ses-02_confcor.txt
    │   │   ├── sub-01_ses-02_confmat.1D
    │   │   ├── sub-01_ses-02_nVolumesCensored.txt
    │   │   └── sub-01_ses-02_residualised.nii.gz
    │   ├── reho
    │   │   ├── sub-01_ses-02_reho.nii.gz
    │   │   └── sub-01_ses-02_rehoZ.nii.gz
    │   ├── roiquant
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-02_aal116_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_aal116_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_aal116_mean_reho.csv
    │   │   │   └── sub-01_ses-02_aal116_mean_rehoZ.csv
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-02_desikanKilliany_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_desikanKilliany_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_desikanKilliany_mean_reho.csv
    │   │   │   └── sub-01_ses-02_desikanKilliany_mean_rehoZ.csv
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-02_glasser360_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_glasser360_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_glasser360_mean_reho.csv
    │   │   │   └── sub-01_ses-02_glasser360_mean_rehoZ.csv
    │   │   ├── global
    │   │   │   ├── sub-01_ses-02_global_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_global_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_global_mean_reho.csv
    │   │   │   └── sub-01_ses-02_global_mean_rehoZ.csv
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-02_gordon333_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_gordon333_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_gordon333_mean_reho.csv
    │   │   │   └── sub-01_ses-02_gordon333_mean_rehoZ.csv
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-02_HarvardOxford_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_HarvardOxford_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_HarvardOxford_mean_reho.csv
    │   │   │   └── sub-01_ses-02_HarvardOxford_mean_rehoZ.csv
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-02_power264_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_power264_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_power264_mean_reho.csv
    │   │   │   └── sub-01_ses-02_power264_mean_rehoZ.csv
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-02_schaefer100x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer100x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer100x17_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer100x17_mean_rehoZ.csv
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-02_schaefer100x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer100x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer100x7_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer100x7_mean_rehoZ.csv
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-02_schaefer200x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer200x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer200x17_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer200x17_mean_rehoZ.csv
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-02_schaefer200x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer200x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer200x7_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer200x7_mean_rehoZ.csv
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-02_schaefer400x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer400x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer400x17_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer400x17_mean_rehoZ.csv
    │   │   ├── schaefer400x7
    │   │   │   ├── sub-01_ses-02_schaefer400x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-02_schaefer400x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-02_schaefer400x7_mean_reho.csv
    │   │   │   └── sub-01_ses-02_schaefer400x7_mean_rehoZ.csv
    │   │   └── segmentation
    │   │       ├── sub-01_ses-02_segmentation_mean_alff.csv
    │   │       ├── sub-01_ses-02_segmentation_mean_alffZ.csv
    │   │       ├── sub-01_ses-02_segmentation_mean_reho.csv
    │   │       └── sub-01_ses-02_segmentation_mean_rehoZ.csv
    │   ├── sub-01_ses-02_atlas
    │   │   ├── sub-01_ses-02_aal116.nii.gz
    │   │   ├── sub-01_ses-02_atlas.json
    │   │   ├── sub-01_ses-02_desikanKilliany.nii.gz
    │   │   ├── sub-01_ses-02_glasser360.nii.gz
    │   │   ├── sub-01_ses-02_global.nii.gz -> ../prestats/sub-01_ses-02_mask.nii.gz
    │   │   ├── sub-01_ses-02_gordon333.nii.gz
    │   │   ├── sub-01_ses-02_HarvardOxford.nii.gz
    │   │   ├── sub-01_ses-02_power264.nii.gz
    │   │   ├── sub-01_ses-02_schaefer100x17.nii.gz
    │   │   ├── sub-01_ses-02_schaefer100x7.nii.gz
    │   │   ├── sub-01_ses-02_schaefer200x17.nii.gz
    │   │   ├── sub-01_ses-02_schaefer200x7.nii.gz
    │   │   ├── sub-01_ses-02_schaefer400x17.nii.gz
    │   │   ├── sub-01_ses-02_schaefer400x7.nii.gz
    │   │   └── sub-01_ses-02_segmentation.nii.gz -> ../prestats/sub-01_ses-02_segmentation.nii.gz
    │   ├── sub-01_ses-02_derivatives.json
    │   ├── sub-01_ses-02_derivatives-sub-01_ses-02_anatomical.json
    │   ├── sub-01_ses-02.dsn
    │   ├── sub-01_ses-02_logs
    │   │   ├── fc_root_202011221212_sub-01_ses-02LOG-process
    │   │   └── sub-01_ses-02_audit.csv
    │   ├── sub-01_ses-02-nFlags.1D
    │   ├── sub-01_ses-02_quality.csv
    │   ├── sub-01_ses-02_report.html
    │   └── sub-01_ses-02_spaces.json
    ├── ses-03
    │   ├── alff
    │   │   ├── sub-01_ses-03_alff.nii.gz
    │   │   └── sub-01_ses-03_alffZ.nii.gz
    │   ├── confound2
    │   │   ├── mc
    │   │   │   ├── sub-01_ses-03_dvars-mean.txt
    │   │   │   ├── sub-01_ses-03_dvars-raw.1D
    │   │   │   ├── sub-01_ses-03_dvars-std.1D
    │   │   │   ├── sub-01_ses-03_dvars-vox.1D
    │   │   │   ├── sub-01_ses-03_fd.1D
    │   │   │   ├── sub-01_ses-03_motionDVCorr.txt
    │   │   │   ├── sub-01_ses-03_realignment.1D
    │   │   │   ├── sub-01_ses-03_relMaxRMS.txt
    │   │   │   ├── sub-01_ses-03_relMeanRMS.txt
    │   │   │   ├── sub-01_ses-03_relRMS.1D
    │   │   │   ├── sub-01_ses-03_spatial_sd.1D
    │   │   │   ├── sub-01_ses-03_tmask.1D
    │   │   │   ├── sub-01_ses-03_ts_outliers.1D
    │   │   │   └── sub-01_ses-03_ts_quality_index.1D
    │   │   ├── sub-01_ses-03_confmat.1D
    │   │   ├── sub-01_ses-03_csf.1D
    │   │   ├── sub-01_ses-03_gsr.1D
    │   │   ├── sub-01_ses-03_modelParameterCount.txt
    │   │   └── sub-01_ses-03_wm.1D
    │   ├── fcon
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-03_aal116.net
    │   │   │   ├── sub-01_ses-03_aal116_network.txt
    │   │   │   └── sub-01_ses-03_aal116_ts.1D
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-03_desikanKilliany_missing.txt
    │   │   │   ├── sub-01_ses-03_desikanKilliany.net
    │   │   │   ├── sub-01_ses-03_desikanKilliany_network.txt
    │   │   │   └── sub-01_ses-03_desikanKilliany_ts.1D
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-03_glasser360_missing.txt
    │   │   │   ├── sub-01_ses-03_glasser360.net
    │   │   │   ├── sub-01_ses-03_glasser360_network.txt
    │   │   │   └── sub-01_ses-03_glasser360_ts.1D
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-03_gordon333_missing.txt
    │   │   │   ├── sub-01_ses-03_gordon333.net
    │   │   │   ├── sub-01_ses-03_gordon333_network.txt
    │   │   │   └── sub-01_ses-03_gordon333_ts.1D
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-03_HarvardOxford.net
    │   │   │   ├── sub-01_ses-03_HarvardOxford_network.txt
    │   │   │   └── sub-01_ses-03_HarvardOxford_ts.1D
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-03_power264.net
    │   │   │   ├── sub-01_ses-03_power264_network.txt
    │   │   │   └── sub-01_ses-03_power264_ts.1D
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-03_schaefer100x17.net
    │   │   │   ├── sub-01_ses-03_schaefer100x17_network.txt
    │   │   │   └── sub-01_ses-03_schaefer100x17_ts.1D
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-03_schaefer100x7.net
    │   │   │   ├── sub-01_ses-03_schaefer100x7_network.txt
    │   │   │   └── sub-01_ses-03_schaefer100x7_ts.1D
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-03_schaefer200x17.net
    │   │   │   ├── sub-01_ses-03_schaefer200x17_network.txt
    │   │   │   └── sub-01_ses-03_schaefer200x17_ts.1D
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-03_schaefer200x7.net
    │   │   │   ├── sub-01_ses-03_schaefer200x7_network.txt
    │   │   │   └── sub-01_ses-03_schaefer200x7_ts.1D
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-03_schaefer400x17.net
    │   │   │   ├── sub-01_ses-03_schaefer400x17_network.txt
    │   │   │   └── sub-01_ses-03_schaefer400x17_ts.1D
    │   │   └── schaefer400x7
    │   │       ├── sub-01_ses-03_schaefer400x7.net
    │   │       ├── sub-01_ses-03_schaefer400x7_network.txt
    │   │       └── sub-01_ses-03_schaefer400x7_ts.1D
    │   ├── figures
    │   │   ├── sub-01_ses-03_alff.svg
    │   │   ├── sub-01_ses-03_corrplot.svg
    │   │   ├── sub-01_ses-03_normalization.svg
    │   │   ├── sub-01_ses-03_prestats.svg
    │   │   ├── sub-01_ses-03_qcfc.svg
    │   │   ├── sub-01_ses-03_registration.svg
    │   │   ├── sub-01_ses-03_reho.svg
    │   │   └── sub-01_ses-03_voxts.png
    │   ├── norm
    │   │   ├── sub-01_ses-03_alffStd.nii.gz
    │   │   ├── sub-01_ses-03_alffZStd.nii.gz
    │   │   ├── sub-01_ses-03_maskStd.nii.gz
    │   │   ├── sub-01_ses-03_normCoverage.txt
    │   │   ├── sub-01_ses-03_normCrossCorr.txt
    │   │   ├── sub-01_ses-03_normDice.txt
    │   │   ├── sub-01_ses-03_normJaccard.txt
    │   │   ├── sub-01_ses-03_referenceVolumeBrainStd.nii.gz
    │   │   ├── sub-01_ses-03_rehoStd.nii.gz
    │   │   ├── sub-01_ses-03_rehoZStd.nii.gz
    │   │   ├── sub-01_ses-03_seq2std.png
    │   │   ├── sub-01_ses-03_std.nii.gz
    │   │   └── template.nii.gz
    │   ├── prestats
    │   │   ├── mc
    │   │   ├── sub-01_ses-03_coregCoverage.txt
    │   │   ├── sub-01_ses-03_coregCrossCorr.txt
    │   │   ├── sub-01_ses-03_coregDice.txt
    │   │   ├── sub-01_ses-03_coregJaccard.txt
    │   │   ├── sub-01_ses-03_fmriconf.json
    │   │   ├── sub-01_ses-03_fmriconf.tsv
    │   │   ├── sub-01_ses-03_mask.nii.gz
    │   │   ├── sub-01_ses-03_referenceVolumeBrain.nii.gz
    │   │   └── sub-01_ses-03_referenceVolume.nii.gz
    │   ├── qcfc
    │   │   ├── sub-01_ses-03_dvars-mean.txt
    │   │   ├── sub-01_ses-03_dvars-raw.1D
    │   │   ├── sub-01_ses-03_dvars-std.1D
    │   │   ├── sub-01_ses-03_dvars-vox.1D
    │   │   ├── sub-01_ses-03_motionDVCorr.txt
    │   │   └── sub-01_ses-03_tdof.txt
    │   ├── regress
    │   │   ├── sub-01_ses-03_confcor.txt
    │   │   ├── sub-01_ses-03_confmat.1D
    │   │   ├── sub-01_ses-03_nVolumesCensored.txt
    │   │   └── sub-01_ses-03_residualised.nii.gz
    │   ├── reho
    │   │   ├── sub-01_ses-03_reho.nii.gz
    │   │   └── sub-01_ses-03_rehoZ.nii.gz
    │   ├── roiquant
    │   │   ├── aal116
    │   │   │   ├── sub-01_ses-03_aal116_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_aal116_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_aal116_mean_reho.csv
    │   │   │   └── sub-01_ses-03_aal116_mean_rehoZ.csv
    │   │   ├── desikanKilliany
    │   │   │   ├── sub-01_ses-03_desikanKilliany_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_desikanKilliany_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_desikanKilliany_mean_reho.csv
    │   │   │   └── sub-01_ses-03_desikanKilliany_mean_rehoZ.csv
    │   │   ├── glasser360
    │   │   │   ├── sub-01_ses-03_glasser360_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_glasser360_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_glasser360_mean_reho.csv
    │   │   │   └── sub-01_ses-03_glasser360_mean_rehoZ.csv
    │   │   ├── global
    │   │   │   ├── sub-01_ses-03_global_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_global_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_global_mean_reho.csv
    │   │   │   └── sub-01_ses-03_global_mean_rehoZ.csv
    │   │   ├── gordon333
    │   │   │   ├── sub-01_ses-03_gordon333_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_gordon333_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_gordon333_mean_reho.csv
    │   │   │   └── sub-01_ses-03_gordon333_mean_rehoZ.csv
    │   │   ├── HarvardOxford
    │   │   │   ├── sub-01_ses-03_HarvardOxford_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_HarvardOxford_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_HarvardOxford_mean_reho.csv
    │   │   │   └── sub-01_ses-03_HarvardOxford_mean_rehoZ.csv
    │   │   ├── power264
    │   │   │   ├── sub-01_ses-03_power264_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_power264_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_power264_mean_reho.csv
    │   │   │   └── sub-01_ses-03_power264_mean_rehoZ.csv
    │   │   ├── schaefer100x17
    │   │   │   ├── sub-01_ses-03_schaefer100x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer100x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer100x17_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer100x17_mean_rehoZ.csv
    │   │   ├── schaefer100x7
    │   │   │   ├── sub-01_ses-03_schaefer100x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer100x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer100x7_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer100x7_mean_rehoZ.csv
    │   │   ├── schaefer200x17
    │   │   │   ├── sub-01_ses-03_schaefer200x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer200x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer200x17_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer200x17_mean_rehoZ.csv
    │   │   ├── schaefer200x7
    │   │   │   ├── sub-01_ses-03_schaefer200x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer200x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer200x7_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer200x7_mean_rehoZ.csv
    │   │   ├── schaefer400x17
    │   │   │   ├── sub-01_ses-03_schaefer400x17_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer400x17_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer400x17_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer400x17_mean_rehoZ.csv
    │   │   ├── schaefer400x7
    │   │   │   ├── sub-01_ses-03_schaefer400x7_mean_alff.csv
    │   │   │   ├── sub-01_ses-03_schaefer400x7_mean_alffZ.csv
    │   │   │   ├── sub-01_ses-03_schaefer400x7_mean_reho.csv
    │   │   │   └── sub-01_ses-03_schaefer400x7_mean_rehoZ.csv
    │   │   └── segmentation
    │   │       ├── sub-01_ses-03_segmentation_mean_alff.csv
    │   │       ├── sub-01_ses-03_segmentation_mean_alffZ.csv
    │   │       ├── sub-01_ses-03_segmentation_mean_reho.csv
    │   │       └── sub-01_ses-03_segmentation_mean_rehoZ.csv
    │   ├── sub-01_ses-03_atlas
    │   │   ├── sub-01_ses-03_aal116.nii.gz
    │   │   ├── sub-01_ses-03_atlas.json
    │   │   ├── sub-01_ses-03_desikanKilliany.nii.gz
    │   │   ├── sub-01_ses-03_glasser360.nii.gz
    │   │   ├── sub-01_ses-03_global.nii.gz -> ../prestats/sub-01_ses-03_mask.nii.gz
    │   │   ├── sub-01_ses-03_gordon333.nii.gz
    │   │   ├── sub-01_ses-03_HarvardOxford.nii.gz
    │   │   ├── sub-01_ses-03_power264.nii.gz
    │   │   ├── sub-01_ses-03_schaefer100x17.nii.gz
    │   │   ├── sub-01_ses-03_schaefer100x7.nii.gz
    │   │   ├── sub-01_ses-03_schaefer200x17.nii.gz
    │   │   ├── sub-01_ses-03_schaefer200x7.nii.gz
    │   │   ├── sub-01_ses-03_schaefer400x17.nii.gz
    │   │   ├── sub-01_ses-03_schaefer400x7.nii.gz
    │   │   └── sub-01_ses-03_segmentation.nii.gz -> ../prestats/sub-01_ses-03_segmentation.nii.gz
    │   ├── sub-01_ses-03_derivatives.json
    │   ├── sub-01_ses-03_derivatives-sub-01_ses-03_anatomical.json
    │   ├── sub-01_ses-03.dsn
    │   ├── sub-01_ses-03_logs
    │   │   ├── fc_root_202011221212_sub-01_ses-03LOG-process
    │   │   └── sub-01_ses-03_audit.csv
    │   ├── sub-01_ses-03-nFlags.1D
    │   ├── sub-01_ses-03_quality.csv
    │   ├── sub-01_ses-03_report.html
    │   └── sub-01_ses-03_spaces.json
    └── ses-04
        ├── alff
        │   ├── sub-01_ses-04_alff.nii.gz
        │   └── sub-01_ses-04_alffZ.nii.gz
        ├── confound2
        │   ├── mc
        │   │   ├── sub-01_ses-04_dvars-mean.txt
        │   │   ├── sub-01_ses-04_dvars-raw.1D
        │   │   ├── sub-01_ses-04_dvars-std.1D
        │   │   ├── sub-01_ses-04_dvars-vox.1D
        │   │   ├── sub-01_ses-04_fd.1D
        │   │   ├── sub-01_ses-04_motionDVCorr.txt
        │   │   ├── sub-01_ses-04_realignment.1D
        │   │   ├── sub-01_ses-04_relMaxRMS.txt
        │   │   ├── sub-01_ses-04_relMeanRMS.txt
        │   │   ├── sub-01_ses-04_relRMS.1D
        │   │   ├── sub-01_ses-04_spatial_sd.1D
        │   │   ├── sub-01_ses-04_tmask.1D
        │   │   ├── sub-01_ses-04_ts_outliers.1D
        │   │   └── sub-01_ses-04_ts_quality_index.1D
        │   ├── sub-01_ses-04_confmat.1D
        │   ├── sub-01_ses-04_csf.1D
        │   ├── sub-01_ses-04_gsr.1D
        │   ├── sub-01_ses-04_modelParameterCount.txt
        │   └── sub-01_ses-04_wm.1D
        ├── fcon
        │   ├── aal116
        │   │   ├── sub-01_ses-04_aal116.net
        │   │   ├── sub-01_ses-04_aal116_network.txt
        │   │   └── sub-01_ses-04_aal116_ts.1D
        │   ├── desikanKilliany
        │   │   ├── sub-01_ses-04_desikanKilliany_missing.txt
        │   │   ├── sub-01_ses-04_desikanKilliany.net
        │   │   ├── sub-01_ses-04_desikanKilliany_network.txt
        │   │   └── sub-01_ses-04_desikanKilliany_ts.1D
        │   ├── glasser360
        │   │   ├── sub-01_ses-04_glasser360_missing.txt
        │   │   ├── sub-01_ses-04_glasser360.net
        │   │   ├── sub-01_ses-04_glasser360_network.txt
        │   │   └── sub-01_ses-04_glasser360_ts.1D
        │   ├── gordon333
        │   │   ├── sub-01_ses-04_gordon333_missing.txt
        │   │   ├── sub-01_ses-04_gordon333.net
        │   │   ├── sub-01_ses-04_gordon333_network.txt
        │   │   └── sub-01_ses-04_gordon333_ts.1D
        │   ├── HarvardOxford
        │   │   ├── sub-01_ses-04_HarvardOxford.net
        │   │   ├── sub-01_ses-04_HarvardOxford_network.txt
        │   │   └── sub-01_ses-04_HarvardOxford_ts.1D
        │   ├── power264
        │   │   ├── sub-01_ses-04_power264.net
        │   │   ├── sub-01_ses-04_power264_network.txt
        │   │   └── sub-01_ses-04_power264_ts.1D
        │   ├── schaefer100x17
        │   │   ├── sub-01_ses-04_schaefer100x17.net
        │   │   ├── sub-01_ses-04_schaefer100x17_network.txt
        │   │   └── sub-01_ses-04_schaefer100x17_ts.1D
        │   ├── schaefer100x7
        │   │   ├── sub-01_ses-04_schaefer100x7.net
        │   │   ├── sub-01_ses-04_schaefer100x7_network.txt
        │   │   └── sub-01_ses-04_schaefer100x7_ts.1D
        │   ├── schaefer200x17
        │   │   ├── sub-01_ses-04_schaefer200x17.net
        │   │   ├── sub-01_ses-04_schaefer200x17_network.txt
        │   │   └── sub-01_ses-04_schaefer200x17_ts.1D
        │   ├── schaefer200x7
        │   │   ├── sub-01_ses-04_schaefer200x7.net
        │   │   ├── sub-01_ses-04_schaefer200x7_network.txt
        │   │   └── sub-01_ses-04_schaefer200x7_ts.1D
        │   ├── schaefer400x17
        │   │   ├── sub-01_ses-04_schaefer400x17.net
        │   │   ├── sub-01_ses-04_schaefer400x17_network.txt
        │   │   └── sub-01_ses-04_schaefer400x17_ts.1D
        │   └── schaefer400x7
        │       ├── sub-01_ses-04_schaefer400x7.net
        │       ├── sub-01_ses-04_schaefer400x7_network.txt
        │       └── sub-01_ses-04_schaefer400x7_ts.1D
        ├── figures
        │   ├── sub-01_ses-04_alff.svg
        │   ├── sub-01_ses-04_corrplot.svg
        │   ├── sub-01_ses-04_normalization.svg
        │   ├── sub-01_ses-04_prestats.svg
        │   ├── sub-01_ses-04_qcfc.svg
        │   ├── sub-01_ses-04_registration.svg
        │   ├── sub-01_ses-04_reho.svg
        │   └── sub-01_ses-04_voxts.png
        ├── norm
        │   ├── sub-01_ses-04_alffStd.nii.gz
        │   ├── sub-01_ses-04_alffZStd.nii.gz
        │   ├── sub-01_ses-04_maskStd.nii.gz
        │   ├── sub-01_ses-04_normCoverage.txt
        │   ├── sub-01_ses-04_normCrossCorr.txt
        │   ├── sub-01_ses-04_normDice.txt
        │   ├── sub-01_ses-04_normJaccard.txt
        │   ├── sub-01_ses-04_referenceVolumeBrainStd.nii.gz
        │   ├── sub-01_ses-04_rehoStd.nii.gz
        │   ├── sub-01_ses-04_rehoZStd.nii.gz
        │   ├── sub-01_ses-04_seq2std.png
        │   ├── sub-01_ses-04_std.nii.gz
        │   └── template.nii.gz
        ├── prestats
        │   ├── mc
        │   ├── sub-01_ses-04_coregCoverage.txt
        │   ├── sub-01_ses-04_coregCrossCorr.txt
        │   ├── sub-01_ses-04_coregDice.txt
        │   ├── sub-01_ses-04_coregJaccard.txt
        │   ├── sub-01_ses-04_fmriconf.json
        │   ├── sub-01_ses-04_fmriconf.tsv
        │   ├── sub-01_ses-04_mask.nii.gz
        │   ├── sub-01_ses-04_referenceVolumeBrain.nii.gz
        │   └── sub-01_ses-04_referenceVolume.nii.gz
        ├── qcfc
        │   ├── sub-01_ses-04_dvars-mean.txt
        │   ├── sub-01_ses-04_dvars-raw.1D
        │   ├── sub-01_ses-04_dvars-std.1D
        │   ├── sub-01_ses-04_dvars-vox.1D
        │   ├── sub-01_ses-04_motionDVCorr.txt
        │   └── sub-01_ses-04_tdof.txt
        ├── regress
        │   ├── sub-01_ses-04_confcor.txt
        │   ├── sub-01_ses-04_confmat.1D
        │   ├── sub-01_ses-04_nVolumesCensored.txt
        │   └── sub-01_ses-04_residualised.nii.gz
        ├── reho
        │   ├── sub-01_ses-04_reho.nii.gz
        │   └── sub-01_ses-04_rehoZ.nii.gz
        ├── roiquant
        │   ├── aal116
        │   │   ├── sub-01_ses-04_aal116_mean_alff.csv
        │   │   ├── sub-01_ses-04_aal116_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_aal116_mean_reho.csv
        │   │   └── sub-01_ses-04_aal116_mean_rehoZ.csv
        │   ├── desikanKilliany
        │   │   ├── sub-01_ses-04_desikanKilliany_mean_alff.csv
        │   │   ├── sub-01_ses-04_desikanKilliany_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_desikanKilliany_mean_reho.csv
        │   │   └── sub-01_ses-04_desikanKilliany_mean_rehoZ.csv
        │   ├── glasser360
        │   │   ├── sub-01_ses-04_glasser360_mean_alff.csv
        │   │   ├── sub-01_ses-04_glasser360_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_glasser360_mean_reho.csv
        │   │   └── sub-01_ses-04_glasser360_mean_rehoZ.csv
        │   ├── global
        │   │   ├── sub-01_ses-04_global_mean_alff.csv
        │   │   ├── sub-01_ses-04_global_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_global_mean_reho.csv
        │   │   └── sub-01_ses-04_global_mean_rehoZ.csv
        │   ├── gordon333
        │   │   ├── sub-01_ses-04_gordon333_mean_alff.csv
        │   │   ├── sub-01_ses-04_gordon333_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_gordon333_mean_reho.csv
        │   │   └── sub-01_ses-04_gordon333_mean_rehoZ.csv
        │   ├── HarvardOxford
        │   │   ├── sub-01_ses-04_HarvardOxford_mean_alff.csv
        │   │   ├── sub-01_ses-04_HarvardOxford_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_HarvardOxford_mean_reho.csv
        │   │   └── sub-01_ses-04_HarvardOxford_mean_rehoZ.csv
        │   ├── power264
        │   │   ├── sub-01_ses-04_power264_mean_alff.csv
        │   │   ├── sub-01_ses-04_power264_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_power264_mean_reho.csv
        │   │   └── sub-01_ses-04_power264_mean_rehoZ.csv
        │   ├── schaefer100x17
        │   │   ├── sub-01_ses-04_schaefer100x17_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer100x17_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer100x17_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer100x17_mean_rehoZ.csv
        │   ├── schaefer100x7
        │   │   ├── sub-01_ses-04_schaefer100x7_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer100x7_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer100x7_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer100x7_mean_rehoZ.csv
        │   ├── schaefer200x17
        │   │   ├── sub-01_ses-04_schaefer200x17_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer200x17_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer200x17_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer200x17_mean_rehoZ.csv
        │   ├── schaefer200x7
        │   │   ├── sub-01_ses-04_schaefer200x7_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer200x7_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer200x7_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer200x7_mean_rehoZ.csv
        │   ├── schaefer400x17
        │   │   ├── sub-01_ses-04_schaefer400x17_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer400x17_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer400x17_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer400x17_mean_rehoZ.csv
        │   ├── schaefer400x7
        │   │   ├── sub-01_ses-04_schaefer400x7_mean_alff.csv
        │   │   ├── sub-01_ses-04_schaefer400x7_mean_alffZ.csv
        │   │   ├── sub-01_ses-04_schaefer400x7_mean_reho.csv
        │   │   └── sub-01_ses-04_schaefer400x7_mean_rehoZ.csv
        │   └── segmentation
        │       ├── sub-01_ses-04_segmentation_mean_alff.csv
        │       ├── sub-01_ses-04_segmentation_mean_alffZ.csv
        │       ├── sub-01_ses-04_segmentation_mean_reho.csv
        │       └── sub-01_ses-04_segmentation_mean_rehoZ.csv
        ├── sub-01_ses-04_atlas
        │   ├── sub-01_ses-04_aal116.nii.gz
        │   ├── sub-01_ses-04_atlas.json
        │   ├── sub-01_ses-04_desikanKilliany.nii.gz
        │   ├── sub-01_ses-04_glasser360.nii.gz
        │   ├── sub-01_ses-04_global.nii.gz -> ../prestats/sub-01_ses-04_mask.nii.gz
        │   ├── sub-01_ses-04_gordon333.nii.gz
        │   ├── sub-01_ses-04_HarvardOxford.nii.gz
        │   ├── sub-01_ses-04_power264.nii.gz
        │   ├── sub-01_ses-04_schaefer100x17.nii.gz
        │   ├── sub-01_ses-04_schaefer100x7.nii.gz
        │   ├── sub-01_ses-04_schaefer200x17.nii.gz
        │   ├── sub-01_ses-04_schaefer200x7.nii.gz
        │   ├── sub-01_ses-04_schaefer400x17.nii.gz
        │   ├── sub-01_ses-04_schaefer400x7.nii.gz
        │   └── sub-01_ses-04_segmentation.nii.gz -> ../prestats/sub-01_ses-04_segmentation.nii.gz
        ├── sub-01_ses-04_derivatives.json
        ├── sub-01_ses-04_derivatives-sub-01_ses-04_anatomical.json
        ├── sub-01_ses-04.dsn
        ├── sub-01_ses-04_logs
        │   ├── fc_root_202011221212_sub-01_ses-04LOG-process
        │   └── sub-01_ses-04_audit.csv
        ├── sub-01_ses-04-nFlags.1D
        ├── sub-01_ses-04_quality.csv
        ├── sub-01_ses-04_report.html
        └── sub-01_ses-04_spaces.json

187 directories, 791 files
a3sha2 commented 3 years ago

sorry for late response. I am sure the cifti processing is in pennbbl/xcpengine:latest, can you use fresh output directory and rerun.

thanks

YukiSakai1209 commented 3 years ago

Thank you for your response. The result that was posted last time was the analysis with the new output directory. To confirm, I delete and pull the docker pennbbl/xcpengine:latest again today and rerun the analysis with the new output directory. However, the outputs were the same (no cifti and gifti outputs in regress folder). How did xcpengine determine whether surface processing should be conducted or not? I can check the needed files or conditions in my data.

YukiSakai1209 commented 3 years ago

@a3sha2 I also included “--output-spaces fsaverage:den-10k” as an option for fMRIprep 20.2.1 to include gifti output. However, pennbbl/xcpengine:latest will not bring any cifti and gifti outputs in regress folder. I would appreciate it very much if you could advise me on anything.

a3sha2 commented 3 years ago

hey @YukiSakai1209 sorry for late response and happy thanksgiving!

I think you have the correct fmriprep output but I am surprised that you are not getting the cifiti output from xcpengine. I pulled the new docker image now and ran xcpengine again with docker image and I have the cifti files in the regress folder:

Screen Shot 2020-11-30 at 3 29 28 AM

The reason why I asked you to use fresh output directory is that, if xcp finds *_residualised.nii.gz during rerun in regress directory, regress module wont be run again, it will be assumed that the module has been completed before.

YukiSakai1209 commented 3 years ago

@a3sha2 Finally, I understand the reason why I cannot get the residualized cifti/gifti outputs. The surface_filt_reg function of surfacefilter.py ( https://github.com/PennBBL/xcpEngine/blob/3fca3eb6eada4440618866fd25e0c5510012b1f8/utils/surfacefilter.py ) will work only when process_order[1] == 'TMP' or 'REG'. Since I used fc-36p_despike.dsn (process_order=['DMT','DSP','TMP','REG']), of course, it did not work. When I use fc-36p, I can get the residualized cifti/gifti outputs.

However, how can I get the residualized cifti/gifti outputs when we use fc-36p_despike.dsn?

YukiSakai1209 commented 3 years ago

@a3sha2 Can you please give me a progress update on this matter below? I'd appreciate it if you could respond.

https://github.com/PennLINC/xcpEngine/issues/411#issuecomment-744845659

smeisler commented 2 years ago

@a3sha2 I have the same issue with fc-acompcor.dsn, presumably for the same reason mentioned above