ykjymkoko
commented
3 years ago Dear all
update for the problem:
It seems ok when I modified the codes and used "design=/design/fc-36p.dsn" in the design file.
docker run --rm -it
-v E:\002_DAT-FC-SCH\004_XCP\fc-36p.dsn:/design/fc-36p.dsn
-v E:\002_DAT-FC-SCH\004_XCP\func_cohort.csv:/cohort/cohort.csv
-v E:\002_DAT-FC-SCH\004_XCP\xcp_output:/xcpOutput
-v E:\002_DAT-FC-SCH\004_XCP\xcp_work:/work
-v E:\002_DAT-FC-SCH\002_analysis:/relative
pennbbl/xcpengine:latest
-d /design/fc-36p.dsn
-c /cohort/cohort.csv
-i /work
-o /xcpOutput
-m s
-r /relative
Dear all
I wonder how the "design=" variable in the section of # ANALYSIS VARIABLES in the design file be set if I using the docker in Windows Subsystem for Linux 2 (WSL2)?
Based on the code generated by xcpengine-docker, I tried the following code:
docker run --rm -it -v E:\XCP_test\fc-36p.dsn:/design/design.dsn -v E:\XCP_test\func_cohort.csv:/cohort/cohort.csv -v E:\XCP_test\xcp_output:/xcpOutput -v E:\XCP_test:/relative pennbbl/xcpengine:latest -d /design/design.dsn -c /cohort/cohort.csv -o /xcpOutput -m s -r /relative
I tried "/relative/fc-36p.dsn" or "/design/design.dsn" but error messages as "No such file or directorycaliser" or "No such file or directoryrintx" for the design file occurred.
After searching the previous threads, I supposed such might relate to the privilege of reading and writing. Actually, I ever had a similar problem with the cohort file when using the xcpengine-docker which mounts the .csv file with "ro". Currently, the cohort and design files were in the same directory, and the cohort file works fairly with the img as fmriprep/sub-1/func/sub-1_task-rest_space-T1w_desc-preproc_bold.nii.gz to indicate the file in E:\XCP_test\fmriprep.
Accordingly, I supposed the problem occurred at the settings of the "design=" variable in the section of # ANALYSIS VARIABLES in the design file.
Thanks a lot!