search

PennLINC / xcpEngine

Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
MIT License
66 stars 42 forks source link

Discrepancies in labelling between Yeo and xcpEngine with regard to Schaefer200x17NodeNames #481

Open dlevitas opened 2 years ago

dlevitas commented 2 years ago

I've noticed a discrepancy between Thomas Yeo's lab and xcpEngine in how some Schaefer200x17 atlas nodes are labelled.

[Yeo lab Schaefer200x17 atlas node names](https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Centroid_coordinates/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.Centroid_RAS.csv)

[xcpEngine Schaefer200x17 atlas node names](https://github.com/PennLINC/xcpEngine/blob/master/atlas/schaefer200x17/schaefer200x17NodeNames.txt)

For example, the Yeo lab ROI label 42 (line 43) is 17Networks_LH_SalVentAttnA_FrOper_1 but in xcpEngine it is listed as LH_SalVentAttnA_Ins_2 (line 42).

This occurs several other times between the two files, so I was wondering how to account for these discrepancies?

LeSasse commented 2 years ago

It seems that perhaps the atlas names have not been updated after this error 3 years ago; https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/Updates/Update_20190916_README.md