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PennTURBO
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turbo-ontology
Hosts the TURBO Ontology and supporting files.
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Time to archive some folders?
#6
Open
turbomam
opened
5 years ago
turbomam
commented
5 years ago
keep
ontologies
HTS domain = ICE #5 19 hours ago
README.md
add some content
archive?
handcrafted_shortcuts
1pm prep last year
is this still relevant now that we use Synthea/OMOP
that doesn't include biobank encounters, loss of function prediction, etc.
karma_models
race identity support last year
haven't done anything with Karma in many months. TURBO model has mooed on since then.
medication_mapping_notes _performance
narratives conflict, deleted but re-added last year
includes notes on analgesics, anti-emetics, anti-arrhythmics, and anti=psychotics
includes some old approaches like clamp and MedEx
I'll reconcile/organize my latest med mapping
may be moot... other Penn collaborators may have a better medication string -> RxNorm mapping solution?
socalled_post_drivetrain
Add files via upload last year
Review the actions that are necessary after a Drivetrain run, like loading clinical ontologies and linked data sets
mostly tools for linking medication mapping results to TURBO graph
includes yet another bioportal API script
RxNorm predicates with usage (in what context?)
utility_python
bioportal term mapping example last year
OLD/superceded get_bioportal_rxnorm_mappings.py
where's the latest replacement?
utility_r
before posting latest med mapping docs last year
mostly medication mapping
some NCBO API stuff, also medication related
isolate_lof_gene_ids.R
keep
archive?
isolate_lof_gene_ids.R