search

PeteHaitch / methtuple

methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.
MIT License
12 stars 3 forks source link

Benchmarking #70

Open PeteHaitch opened 10 years ago

PeteHaitch commented 10 years ago

Perform comprehensive benchmarking of methtuple, beyond the short examples in https://github.com/PeteHaitch/methtuple/blob/master/README.md

PeteHaitch commented 10 years ago

Checkout the sar (systat) linux tool (e.g. http://www.thegeekstuff.com/2011/03/sar-examples/, http://www.slideshare.net/c.titus.brown/2014-pycontalk)

PeteHaitch commented 10 years ago

Profiling https://docs.python.org/2/library/profile.html

PeteHaitch commented 10 years ago

Plot runtime and maximum memory usage against m.

PeteHaitch commented 8 years ago

Update benchmarks used in thesis