methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.
Complete redesign of command line interface.
Python 3 support.
More general ignoring by read position rather than just ignoring start or end of reads.
Bug fix when computing quality scores of overlapping paired-end reads.
Changes to helper_scripts/run_comethylation.sh to support new interface.
Complete redesign of command line interface. Python 3 support. More general ignoring by read position rather than just ignoring start or end of reads. Bug fix when computing quality scores of overlapping paired-end reads. Changes to
helper_scripts/run_comethylation.shto support new interface.