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Peter554 / StainTools

Tools for tissue image stain normalisation and augmentation in Python 3
MIT License
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Missing to scale stain concentration in VahadaneNormalizer?? #21

Closed machisuke closed 6 years ago

machisuke commented 6 years ago

I read the paper and found we need to scale stain concentration in VahadaneNormalizer. But maybe, it doesn't implemented in this library, right??

I think, we should fix fit and transfer method.

machisuke commented 6 years ago

This is reference from Vahadane, Abhishek, et al. "Structure-preserving color normalization and sparse stain separation for histological images." IEEE transactions on medical imaging 35.8 (2016): 1962-1971.

https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=7460968

image

Peter554 commented 6 years ago

Yes I see what you mean. I shall be updating this soon and will close the issue after.

Peter554 commented 6 years ago

Should be fixed now. Let me know if not.