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PeterJackNaylor / DRFNS

This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in Histopathology Images by deep regression of the distance map".
MIT License
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Need of prediction mask #12

Open jtyytim opened 2 years ago

jtyytim commented 2 years ago

Dear author,

I read your paper 'Segmentation of Nuclei in Histopathology Images by deep regression of the distance map' and I found your dataset here. However, we proposed a method of post-processing that can maybe improve the performance of the experiments based on the predicted results directly. So I would like to ask if you can provide your predicted mask (in your paper Table 2) so that I can make a comparison based on it. I am looking forward to hearing from you.

Thiem

PeterJackNaylor commented 2 years ago

Dear Thiem,

I've just uploaded the prediction to my google drive, you should find them here: https://drive.google.com/file/d/1pjW7K7VJtiOp2ymfkb5xz84Ry2JVBfaS/view?usp=sharing . I have a small hesitation as I had two prediction folders that looked very similar with the same date, I hope they are the same. If something doesn't match the publish paper please reach out again.

Good luck with your work, Best, Peter

jtyytim commented 2 years ago

Dear Thiem,

I've just uploaded the prediction to my google drive, you should find them here: https://drive.google.com/file/d/1pjW7K7VJtiOp2ymfkb5xz84Ry2JVBfaS/view?usp=sharing . I have a small hesitation as I had two prediction folders that looked very similar with the same date, I hope they are the same. If something doesn't match the publish paper please reach out again.

Good luck with your work, Best, Peter

Thanks a lot Peter, well done for your link!

jtyytim commented 2 years ago

Dear Peter,

Thanks a lot for your reply. I have already found another table in your paper as follows. [image: image.png] I was curious about the result of 'Trained only on Breast' in the table. Can you please share also the predicted mask && GT of these images ?

Best regards, Thiem

On Mon, 30 May 2022 at 14:37, Peter Naylor @.***> wrote:

Dear Thiem,

I've just uploaded the prediction to my google drive, you should find them here: https://drive.google.com/file/d/1pjW7K7VJtiOp2ymfkb5xz84Ry2JVBfaS/view?usp=sharing . I have a small hesitation as I had two prediction folders that looked very similar with the same date, I hope they are the same. If something doesn't match the publish paper please reach out again.

Good luck with your work, Best, Peter

— Reply to this email directly, view it on GitHub https://github.com/PeterJackNaylor/DRFNS/issues/12#issuecomment-1141108346, or unsubscribe https://github.com/notifications/unsubscribe-auth/AISAN7KTZRTK3KZJFYNFVZLVMSZAXANCNFSM5XKCZN6A . You are receiving this because you authored the thread.Message ID: @.***>

PeterJackNaylor commented 2 years ago

Ah yes, I see. I am very sorry I can't find the samples on my previous laptop... These models were the ones I was using when applying to real breast cancer data but I have now moved to other models for nuclei segmentation. I can help you in training and reproducing those results tho.

jtyytim commented 1 year ago

Thank you Peter for your reply. Could you help to train and reproduce the data if it doesn't take a lot of your time? If so, it couldn't be better!

On Sat, 4 Jun 2022 at 12:04, Peter Naylor @.***> wrote:

Ah yes, I see. I am very sorry I can't find the samples on my previous laptop... These models were the ones I was using when applying to real breast cancer data but I have now moved to other models for nuclei segmentation. I can help you in training and reproducing those results tho.

— Reply to this email directly, view it on GitHub https://github.com/PeterJackNaylor/DRFNS/issues/12#issuecomment-1146581719, or unsubscribe https://github.com/notifications/unsubscribe-auth/AISAN7KLERYWSRWEUEGAPU3VNMS4BANCNFSM5XKCZN6A . You are receiving this because you authored the thread.Message ID: @.***>