PeyracheLab / miniscoPy

A package to analyse calcium imaging data recorded with the Miniscope.
GNU General Public License v2.0
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Motion correction parameters.yaml changes for main_cnmfe_e.ipynb #19

Open lyprince opened 6 years ago

lyprince commented 6 years ago

Motion correction parameter name changes needed in accompanying parameters.yaml file:

e.g.

motion_correction: strides: !!python/tuple [96,94] overlaps: !!python/tuple [6,6] upsample_factor_grid: 1 max_deviation_rigid: 10 max_deviation_patch: 1 max_shifts: [5, 5] nb_round: 1 upsample_factor: 2 filter_size: 10 filter_size_patch: 5 block_size: 100 save_original: False