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Phantom-Aria / Ap_genome_assembly

Scripts and pipeline used in the genome assembly of Apocynum pictum
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About publication information #1

Open changchuanjun opened 2 months ago

changchuanjun commented 2 months ago

Hi, this is a well-organized pipeline that will facilitate readers in practicing within their projects. However, I cannot find the detailed information regarding the corresponding literature, which poses a challenge for me to fully understand the process. Could you please provide a DOI or other publication information if the article is published?

Phantom-Aria commented 2 months ago

Thanks for your interest. The pipeline pertains to the methodology section of our genome report article, which is currently undergoing review. A preprint version has been submitted to bioRxiv and can be accessed at https://doi.org/10.1101/2024.03.08.584125.

changchuanjun commented 2 months ago

Congratulations! Thank you for providing the preprint link. I take a quick look, your manuscript contains many beautiful Figures. I believe it will be of high interest for reviewers and readers. Good luck and hope your manuscript gets published in a high quality journal. I'll see where it ends up.😀😀😀

changchuanjun commented 2 months ago

Hi, I notice that you used the BRAKER3 pipeline to predict your protein-coding genes and cited the corresponding literature. As far as I know, the BRAKER3 article has been published in the journal Genome Research several days ago (https://www.genome.org/cgi/doi/10.1101/gr.278090.123). Therefore, So you can consider citing the published version instead of the previous bioRxiv preprint.😜