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PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool
Mozilla Public License 2.0
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Exception Error #12

Closed bio-bench closed 6 years ago

bio-bench commented 6 years ago

When I try using the tool, I get the following error. Please can you help me with this?

java.lang.NullPointerException at org.pharmgkb.pharmcat.util.Ugt1a1AlleleMatcher.matchHaplotypes(Ugt1a1AlleleMatcher.java:77) at org.pharmgkb.pharmcat.util.Ugt1a1AlleleMatcher.makeLookupCalls(Ugt1a1AlleleMatcher.java:45) at org.pharmgkb.pharmcat.reporter.model.result.GeneReport.setDiplotypes(GeneReport.java:89) at org.pharmgkb.pharmcat.reporter.ReportContext.compileMatcherData(ReportContext.java:110) at org.pharmgkb.pharmcat.reporter.ReportContext.(ReportContext.java:58) at org.pharmgkb.pharmcat.reporter.Reporter.analyze(Reporter.java:140) at org.pharmgkb.pharmcat.PharmCAT.execute(PharmCAT.java:163) at org.pharmgkb.pharmcat.PharmCAT.main(PharmCAT.java:86)

whaleyr commented 6 years ago

This should have been fixed in e48f2eee194338ed172cddc6114ef8b8c5789478. Let me know if it wasn't.