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PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool
Mozilla Public License 2.0
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FHIR support #17

Open whaleyr opened 6 years ago

whaleyr commented 6 years ago

Evaluate support for FHIR.

Assuming this could be an output format for JSON or XML instead of the HTML report. We would need to figure out how all the data in the report fits into the defined FHIR "resource types".

sirkyp commented 6 years ago

It is likely you have seen this, but do take a look at this page on FHIR: http://build.fhir.org/documentation.html In particular, review the Background section.

Also, it is still in a draft stage, but wanted to reference the following FHIR Implementation Guide currently being developed by the Clinical Genomics Working Group in HL7:

http://build.fhir.org/ig/HL7/genomics-reporting/

There are some PGx specific recommendations. Happy to provide an overview if needed.

whaleyr commented 6 years ago

@cerkyp Thanks for the links. That's a lot to go through.

whaleyr commented 3 years ago

I'm going to use this as the tracking issue for Module 6 in #39. We will make FHIR support a "module" that will work with output from the Reporter module.