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PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool
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HAPB3 calling #191

Closed diegomd90 closed 2 months ago

diegomd90 commented 2 months ago

Hello;

I'm running Pharmcat 2.6 on a Ubuntu OS

I'm having some issues regarding HAPB3 calling on some on my samples:

java.lang.IllegalStateException: Least function gene cannot have more than 1 diplotype: Reference/Reference; c.1129-5923C>G, c.1236G>A (HapB3)/c.1129-5923C>G, c.1236G>A (HapB3)
    at org.pharmgkb.pharmcat.haplotype.NamedAlleleMatcher.callDpyd(NamedAlleleMatcher.java:303)
    at org.pharmgkb.pharmcat.haplotype.NamedAlleleMatcher.call(NamedAlleleMatcher.java:196)
    at org.pharmgkb.pharmcat.Pipeline.call(Pipeline.java:235)
    at org.pharmgkb.pharmcat.PharmCAT.main(PharmCAT.java:166)

I have never seen this error before, can you help me?

BinglanLi commented 2 months ago

Please use the latest PharmCAT release following the link. And please feel free to let us know if the issue still happens for you.

markwoon commented 2 months ago

Please re-open this issue if this is a problem with a current release.