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PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool
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Allele Definition Preprocessing #76

Closed CryALotz closed 1 year ago

CryALotz commented 3 years ago

In https://github.com/PharmGKB/PharmCAT/wiki#documentation which show the whole process of PharmCAT. Is there any data preprocessing of Allele Definitions Element before being use as an input in Named Allele Matcher process after pull it from CPIC ?

whaleyr commented 2 years ago

Your question is pretty vague so I'm not sure about the best way to answer it. There is some "processing" that's done to the CPIC recommendation to get it into a format that's easily consumable by PharmCAT but there is no substantial change to the contents of the CPIC recommendation data.

Is there there something specific you're trying to do that we could help with?