whaleyr
commented
2 years ago It looks like you're trying to run with JDK8. Can you try again with JDK14? JDK14 is a requirement for PharmCAT.
Closed joseph-yclam closed 2 years ago
whaleyr
commented
2 years ago It looks like you're trying to run with JDK8. Can you try again with JDK14? JDK14 is a requirement for PharmCAT.
Do you want to request a feature or report a bug? Feature
What is the current behavior? Running into a JNI error despite having downloaded the appropriate Java environments and version on the anaconda server. It reads as:
Error: A JNI error has occurred, please check your installation and try again Exception in thread "main" java.lang.UnsupportedClassVersionError: org/pharmgkb/pharmcat/PharmCAT has been compiled by a more recent version of the Java Runtime (class file version 58.0), this version of the Java Runtime only recognizes class file versions up to 52.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:763) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142) at java.net.URLClassLoader.defineClass(URLClassLoader.java:467) at java.net.URLClassLoader.access$100(URLClassLoader.java:73) at java.net.URLClassLoader$1.run(URLClassLoader.java:368) at java.net.URLClassLoader$1.run(URLClassLoader.java:362) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:361) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:495)If the current behavior is a bug, please provide the steps to reproduce and, if possible, your example input data via a Gist or similar.
What is the expected behavior? When running
java -jar "/localhome/PharmCAT-1.2.0/lib/pharmcat-1.2.0-all.jar" -vcf pharmcat_positions.vcf -o test_outdir, using the test data it should work.What is the motivation / use case for changing the behavior?
Please tell us about your environment:
Other information (e.g. detailed explanation, stacktraces, related issues, suggestions how to fix, links for us to have context, e.g. stackoverflow, gitter, etc.)
I tried using the following link to solve the JNI error and used the java command to see if I had the appropriate version: https://stackoverflow.com/questions/22381202/a-jni-error-has-occurred-please-check-your-installation-and-try-again-in-eclips. I confirmed that I was using the correct Java version in my anaconda environment on a separate computational server but still am unable to get the test command to work?