Open Phelimb opened 8 years ago
@rmnorris
Thanks!
I'll take a look at these and let you know. Could you possibly send the sample ids of where you saw these?
CAV1741 had the TEM-1 in PacBio, TEM-40 in Nanopore situation, and CAV1016 had the KPC switching issue, P46212 guessed TEM-40 in both PacBio and Nanopore.
Full ids: JR_FAA63658_29092015_ecol_P46212, MN15229_FAA89259_09022016_cfre_CAV1741, JR_FAA35548_13042015_KpneCAV1016
On the fly working in directory /data2/users/rachel/projects/initial/ECCMID/on_the_fly/ with directories for each sample and subdirectories for numbers of reads including fasta.