I am trying to install atlas using virtualenv but I am running into this error:
pip3 install git+https://github.com/Phelimb/atlas
Collecting git+https://github.com/Phelimb/atlas
Cloning https://github.com/Phelimb/atlas to /tmp/pip-req-build-dqbbkhwq
error: RPC failed; curl 56 GnuTLS recv error (-54): Error in the pull function.
fatal: The remote end hung up unexpectedly
fatal: early EOF
fatal: index-pack failed
fatal: clone of 'https://github.com/lh3/bwa.git' into submodule path '/tmp/pip-req-build-dqbbkhwq/mccortex/libs/bwa' failed
Failed to clone 'libs/bwa'. Retry scheduled
error: RPC failed; curl 56 GnuTLS recv error (-54): Error in the pull function.
fatal: The remote end hung up unexpectedly
fatal: early EOF
fatal: index-pack failed
fatal: clone of 'https://github.com/samtools/htslib.git' into submodule path '/tmp/pip-req-build-dqbbkhwq/mccortex/libs/htslib' failed
Failed to clone 'libs/htslib'. Retry scheduled
error: RPC failed; curl 18 transfer closed with outstanding read data remaining
fatal: The remote end hung up unexpectedly
fatal: early EOF
fatal: index-pack failed
fatal: clone of 'https://github.com/samtools/samtools.git' into submodule path '/tmp/pip-req-build-dqbbkhwq/mccortex/libs/samtools' failed
Failed to clone 'libs/samtools'. Retry scheduled
I am trying to install atlas using virtualenv but I am running into this error: