Phlya
commented
6 years ago Right... I am not sure what's going on here, but if I trim it down to the basics it works like expected, although the output might not be very nice.
from matplotlib import gridspec
d1={'Afrikaans': 1.35, 'Amharic': 9.51, 'AncientGreek': 11.62, 'Arabic': 9.22, 'Armenian': 2.92, 'Bambara': 0.1, 'Basque': 8.46, 'Belarusian': 2.48, 'Breton': 24.0, 'Bulgarian': 5.12, 'Buryat': 0.0, 'Cantonese': 4.5, 'Catalan': 1.97, 'Chinese': 0.05, 'Coptic': 4.41, 'Croatian': 4.17, 'Czech': 8.74, 'Danish': 14.58, 'Dutch': 15.3, 'English': 0.79, 'Erzya': 21.74, 'Estonian': 17.1, 'Faroese': 8.92, 'Finnish': 5.82, 'French': 2.44, 'Galician': 7.0, 'German': 20.6, 'Gothic': 11.11, 'Greek': 4.88, 'Hebrew': 1.48, 'Hindi': 0.16, 'Hungarian': 7.46, 'Indonesian': 1.12, 'Irish': 98.16, 'Italian': 6.8, 'Japanese': 0.0, 'Kazakh': 0.46, 'Komi': 17.24, 'Korean': 0.04, 'Kurmanji': 0.37, 'Latin': 6.14, 'Latvian': 3.34, 'Lithuanian': 0.98, 'Maltese': 0.0, 'Marathi': 1.95, 'Naija': 0.11, 'NorthSami': 4.48, 'Norwegian': 12.59, 'OldChurchSlavonic': 13.42, 'OldFrench': 10.6, 'Persian': 2.45, 'Polish': 15.49, 'Portuguese': 3.1, 'Romanian': 12.75, 'Russian': 5.9, 'Sanskrit': 9.46, 'Serbian': 9.7, 'Slovak': 11.67, 'Slovenian': 12.08, 'Spanish': 3.41, 'Swedish': 13.36, 'SwedishSign': 18.89, 'Tagalog': 100.0, 'Tamil': 5.61, 'Telugu': 0.0, 'Thai': 0.0, 'Turkish': 9.95, 'Ukrainian': 5.39, 'UpperSorbian': 5.66, 'Urdu': 0.21, 'Uyghur': 1.96, 'Vietnamese': 0}
d2={'Afrikaans': 2.63, 'Amharic': 0.59, 'AncientGreek': 41.61, 'Arabic': 73.29, 'Armenian': 20.6, 'Bambara': 0.0, 'Basque': 18.53, 'Belarusian': 33.54, 'Breton': 53.99, 'Bulgarian': 30.08, 'Buryat': 0.38, 'Cantonese': 5.31, 'Catalan': 23.57, 'Chinese': 0.24, 'Coptic': 28.02, 'Croatian': 28.64, 'Czech': 37.94, 'Danish': 14.95, 'Dutch': 21.98, 'English': 9.93, 'Erzya': 42.54, 'Estonian': 38.92, 'Faroese': 16.07, 'Finnish': 23.02, 'French': 5.85, 'Galician': 19.7, 'German': 19.77, 'Gothic': 49.52, 'Greek': 35.74, 'Hebrew': 35.52, 'Hindi': 0.39, 'Hungarian': 28.8, 'Indonesian': 4.5, 'Irish': 98.64, 'Italian': 25.96, 'Japanese': 0.0, 'Kazakh': 0.44, 'Komi': 20.17, 'Korean': 0.04, 'Kurmanji': 0.46, 'Latin': 32.51, 'Latvian': 37.48, 'Lithuanian': 39.38, 'Maltese': 10.34, 'Marathi': 2.78, 'Naija': 4.44, 'NorthSami': 32.38, 'Norwegian': 19.04, 'OldChurchSlavonic': 53.81, 'OldFrench': 35.13, 'Persian': 0.73, 'Polish': 36.67, 'Portuguese': 13.93, 'Romanian': 30.23, 'Russian': 33.52, 'Sanskrit': 31.1, 'Serbian': 25.7, 'Slovak': 39.69, 'Slovenian': 31.77, 'Spanish': 22.06, 'Swedish': 19.8, 'SwedishSign': 18.69, 'Tagalog': 97.92, 'Tamil': 0.55, 'Telugu': 0.95, 'Thai': 0.15, 'Turkish': 4.67, 'Ukrainian': 32.81, 'UpperSorbian': 23.85, 'Urdu': 0.18, 'Uyghur': 4.06, 'Vietnamese': 1.62}
langnameGroup={"AncientGreek":"Indo-European", "Arabic":"Semitic", "Basque":"isolate", "Belarusian":"Indo-European-Baltoslavic", "Bulgarian":"Indo-European-Baltoslavic", "Cantonese":"Sino-Austronesian", "Catalan":"Indo-European-Romance", "Chinese":"Sino-Austronesian", "Coptic":"Afroasiatic", "Croatian":"Indo-European-Baltoslavic", "Czech":"Indo-European-Baltoslavic", "Danish":"Indo-European-Germanic", "Dutch":"Indo-European-Germanic", "English":"Indo-European-Germanic", "Estonian":"Agglutinating", "Finnish":"Agglutinating", "French":"Indo-European-Romance", "Galician":"Indo-European-Romance", "German":"Indo-European-Germanic", "Gothic":"Indo-European-Germanic", "Greek":"Indo-European", "Hebrew":"Semitic", "Hindi":"Indo-European", "Hungarian":"Agglutinating", "Indonesian":"Sino-Austronesian", "Irish":"Indo-European", "Italian":"Indo-European-Romance", "Japanese":"Agglutinating", "Kazakh":"Agglutinating", "Korean":"Agglutinating", "Latin":"Indo-European-Romance", "Latvian":"Indo-European-Baltoslavic", "Lithuanian":"Indo-European-Baltoslavic", "Norwegian":"Indo-European-Germanic", "OldChurchSlavonic":"Indo-European-Baltoslavic", "Persian":"Indo-European", "Polish":"Indo-European-Baltoslavic", "Portuguese":"Indo-European-Romance", "Romanian":"Indo-European-Romance", "Russian":"Indo-European-Baltoslavic", "Sanskrit":"Indo-European", "Slovak":"Indo-European-Baltoslavic", "Slovenian":"Indo-European-Baltoslavic", "Spanish":"Indo-European-Romance", "Swedish":"Indo-European-Germanic", "Tamil":"Dravidian", "Turkish":"Agglutinating", "Ukrainian":"Indo-European-Baltoslavic", "Urdu":"Indo-European", "Uyghur":"Agglutinating", "Vietnamese":"Sino-Austronesian",'Afrikaans':'Indo-European-Germanic', 'SwedishSign':'Indo-European-Germanic', 'Kurmanji':'Indo-European', 'NorthSami':'Agglutinating', 'UpperSorbian':"Indo-European-Baltoslavic", 'Buryat':'Agglutinating', 'Telugu':'Dravidian', 'Serbian':"Indo-European-Baltoslavic", 'Marathi':'Indo-European','Naija':"Indo-European-Germanic", "OldFrench":"Indo-European-Romance", "Maltese":"Semitic", "Thai":"Sino-Austronesian","Amharic":"Afroasiatic", 'Erzya': 'Agglutinating', 'Faroese':"Indo-European-Germanic", 'Tagalog':"Sino-Austronesian", 'Bambara':'Niger-Congo', 'Breton':"Indo-European", 'Armenian':"Indo-European", 'Komi': 'Agglutinating'}
groupColors={"Indo-European-Romance":'brown',"Indo-European-Baltoslavic":'purple',"Indo-European-Germanic":'olive',"Indo-European":'royalBlue',"Sino-Austronesian":'limeGreen', "Agglutinating":'red'}
groupMarkers={"Indo-European-Romance":'<',"Indo-European-Baltoslavic":'^',"Indo-European-Germanic":'v',"Indo-European":'>',"Sino-Austronesian":'s', "Agglutinating":'+'}
col1 = pd.Series(d1)
col2 = pd.Series(d2)
c=[groupColors.get(langnameGroup[label],'k') for label in col1.index]
m=[groupMarkers.get(langnameGroup[label],'o') for label in col1.index]
fig, ax = plt.subplots(figsize=(10,10))
# gs = gridspec.GridSpec(2, 2, width_ratios=[1, 25],height_ratios=[25, 1])
# aa = plt.subplot(gs[0])
# ax = plt.subplot(gs[1])
# bb = plt.subplot(gs[3])
li,la = (0,100)
# plt.xlim(li,la)
# plt.ylim(li,la)
ax.set_xlim([li,la])
ax.set_ylim([li,la])
# aa.set_xlim([0, 1])
# aa.set_ylim([li,la])
# bb.set_ylim([0, 1])
# ax.set_xticks([50,100], minor=False) # only the 50% is major
# ax.set_xticks([0,25,50,75,100], minor=True) # all 10th are minor
# ax.set_yticks([50,100], minor=False) # only the 50% is major
# ax.set_yticks([0,25,50,75,100], minor=True) # all 10th are minor
# ax.grid(which='both', axis='both',alpha=.5) # draw grid
# ax.plot([0, 1], [0, 1], transform=ax.transAxes, alpha=.5, color="gray") # diagonal
# aa.set_xticks([], minor=False)
# aa.set_yticks([], minor=False)
# bb.set_xticks([], minor=False)
# bb.set_yticks([], minor=False)
for xx, yy, cc, mm in zip(col1, col2, c, m):
ax.scatter(xx, yy, marker=mm, c=cc)
# aa.scatter([0.5 for _ in col1], col2, c=c, alpha=0.5)
# bb.scatter(col1, [0.5 for _ in col2], c=c, alpha=0.5)
texts=[]
for label, x, y in zip(col1.index, col1, col2):
#texts+=[ax.text(x+1, y+1, label, color=groupColors.get(langnameGroup[label],'k'), fontsize=8)] # original
texts+=[ax.text(x, y, label, color=groupColors.get(langnameGroup[label],'k'), fontsize=8)] # for adjustText
adjust_text(texts, col1, col2,
# expand_text=(1, 1), ha='center', va='top',force_text=.6,lim=277,force_points=0.1,
arrowprops=dict(arrowstyle='-', color='gray', alpha=.5))
(setting lower force helps a lot, as always, but that's not the point here...)
Maybe it has something to do with gridspec?..
Clearly this somehow messes with the coordinate system...
kimgerdes
for example Catalan, Buryat, Cantonese...
Three questions:
Is there a way of preventing labels to end up on top of points?
Is there a way of restricting the distance that the label travels?
Is it difficult to write a function that tells me whether two labels are on top of each others?
If I had an algorithm that moves the labels the best possible but not beyond a given distance and not on top of points, I could use a list of more important to less important languages (because they are mentioned in the text for example) and remove the intersecting label of the lower language in the list...
That would make a perfect graph.
If I zoom even more, I get this
I am not sure whether this approach can work for you, but you could quite easily generate plots with three different axes limits, and only labelling the points that are not labelled in the plot with smaller limits, for example.
for example, Turkish and Vietnamese (at the bottom right) do not hinder each other from retracting.
For finding the bounding box of annotations, yes it would be great if the function would return a dictionary/list of annotation texts with their bounding box and some reference to the actual annotation object, so that it's possible to change or remove it...
Hope that is not too difficult.
Thanks so much!
tacaswell
something like that would be perfect for our graphs...
This is an extension of issue https://github.com/Phlya/adjustText/issues/50 The main graphs that we'll be using in our paper are 2-dimensional. Maybe there is something that can be done with adjustText here, too: So the unadjusted scatter plot is
adjustText gives me
Again, labels are moving that shouldn't. Moreover, some labels are moved right on top of other points. Below is the complete code. You can see a few commented out variables in the adjust_text call that I have experimented with, but they don't seem to make any difference.
Do you have any idea of parameter settings that would give a better uncluttering?
Ideally, one should be able to specify a maximum distance from the original position, and then an option would allow to remove remaining overlapping labels until only non-overlapping remain :smile: