Closed GoogleCodeExporter closed 9 years ago
Original comment by jurge...@gmail.com
on 2 Nov 2009 at 1:03
Try to fix this at reading time:
===================================================================
===================================
| CING: Common Interface for NMR structure Generation version 0.9 (r657)
AW,JFD,GWV 2004-2009 |
===================================================================
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User: jd on: nmr.cmbi.umcn.nl (darwin) at: Tue
Nov 3 00:28:30 2009
Enforcing a redo
Moving CCPN directory from [linkNmrStarData] to [1x5b]
==> Importing data from Ccpn project "1x5b"
Non-standard (residues and their) atoms added:
GLY : HA3 [ 1 163]
==> Molecule 1x5b: Potential disulfide bridges: 1. applying bonds: True
==> Mutating 1x5b.A.CYS79 to CYSS
==> Mutating 1x5b.A.CYS83 to CYSS
==> Ccpn molecule '1x5b' imported
==> Ccpn project imported
-------------------------------------------------------
==> Saving <Project 1x5b>
CING started at : Tue Nov 3 00:28:27 2009
CING stopped at : Tue Nov 3 00:28:57 2009
CING took : 30.650 s
Traceback (most recent call last):
File "/Users/jd/workspace34/cingStable/python/cing/Scripts/validateEntry.py", line 266, in <module>
status = main(*sys.argv[1:])
File "/Users/jd/workspace34/cingStable/python/cing/Scripts/validateEntry.py", line 194, in main
project.save()
File "/Users/jd/workspace34/cingStable/python/cing/core/classes.py", line 604, in save
self[pl.nameListKey] = pl.save() # Save returns a list of name; store these in project
File "/Users/jd/workspace34/cingStable/python/cing/core/classes.py", line 963, in save
if self.classDef.SMLhandler.toFile(l, l.objectPath) == l:
File "/Users/jd/workspace34/cingStable/python/cing/core/sml.py", line 339, in toFile
object.SMLhandler.toSML( object, fp )
File "/Users/jd/workspace34/cingStable/python/cing/core/sml.py", line 907, in toSML
self.list2SML( drl, fp )
File "/Users/jd/workspace34/cingStable/python/cing/core/sml.py", line 275, in list2SML
item.SMLhandler.toSML( item, fp )
File "/Users/jd/workspace34/cingStable/python/cing/core/sml.py", line 884, in toSML
rl.append((r[0].nameTuple(SMLsaveFormat),r[1].nameTuple(SMLsaveFormat)))
File "/Users/jd/workspace34/cingStable/python/cing/core/molecule.py", line 3452, in nameTuple
return (self.residue.chain.molecule.name,
AttributeError: 'NoneType' object has no attribute 'molecule'
Original comment by jurge...@gmail.com
on 5 Nov 2009 at 2:35
Ok now in:
http://nmr.cmbi.ru.nl/NRG-CING/data/x5/1x5b
Original comment by jurge...@gmail.com
on 27 Nov 2009 at 1:35
Original issue reported on code.google.com by
jurge...@gmail.com
on 22 Oct 2009 at 10:18