Bad parse of Povray file by Pov-ray generated by molmol for this entry

[GoogleCodeExporter]

What steps will reproduce the problem?
0. cd /Volumes/tera4/PDB-CING/data/c1/1c1t/1c1t.cing/Temp
1. povray -L/opt/local/bin/povray/include +A0.3 -D +Imol_cor.pov +Otga_tmp 
+W760 +H532 

What is the expected output? What do you see instead?
  0:00:00 Parsing
File: /Volumes/tera4/PDB-CING/data/c1/1c1t/1c1t.cing/Temp/mol_cor.pov  Line:
 3882
Parse Warning: Normal vector in mesh cannot be zero - changing it to <1,0,0>.
File: /Volumes/tera4/PDB-CING/data/c1/1c1t/1c1t.cing/Temp/mol_cor.pov  Line:
 5370
File Context (5 lines):
}
texture {T}
clipped_by {C}
}
texture
Parse Error: Expected 'object or directive', texture found instead

Not sure for how many entries this holds. Haven't seen it for NMR entries yet.

Original issue reported on code.google.com by jurge...@gmail.com on 22 Mar 2010 at 9:41

[GoogleCodeExporter]

Happens a lot:
1ak9 3bth 1c1t 1c1t 3d8p 3e45 1elb 1elb 1gt9 2h43 1j8e 1j8e 1l5j 1l5j 1lgn 1n7s 
1oyg 2vud 1wp6
19/367 entries.

Original comment by jurge...@gmail.com on 22 Mar 2010 at 10:02

• Added labels: Priority-Medium
• Removed labels: Priority-Low

[GoogleCodeExporter]

Probably related to special residues being present.

Original comment by jurge...@gmail.com on 23 Mar 2010 at 10:50

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Becomes important for PDB-CING; not now.

Original comment by jurge...@gmail.com on 14 Apr 2010 at 6:22

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X-ray specific and ignored for now.

Original comment by jurge...@gmail.com on 22 Sep 2010 at 2:30

• Changed state: WontFixForNow

[GoogleCodeExporter]

Also happens for H2_2Ca_64_100 (pdb id 2fsw?) but hard to fix so keeping the 
same status.

Original comment by jurge...@gmail.com on 28 Jan 2011 at 1:56

[GoogleCodeExporter]

Also happens for X-ray entry 1zwj as reported by Donna T.

Original comment by jurge...@gmail.com on 22 Apr 2011 at 9:16

• Added labels: Entry-1zwj

[GoogleCodeExporter]

Donna, in the CING setup for this imagery your entry works as attached.
For future application I suggest you ask Dmitri to update CING and use that 
setup.
Alternatively, he can manually run one entry for you like I did now from:
python $CINGROOT/python/cing/PluginCode/test/test_Molgrap.py

Original comment by jurge...@gmail.com on 22 Apr 2011 at 9:26

Attachments:

• 1zwj.gif