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Post header padding region error #13

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Error when running Newbler2Sam.py script in glu-genetics package
1. run Newbler2SAM.py with 454 alignment text file and sff input file
2. Value:Error: Post header 5 byte padding region contained data

Additional information: for sff file used : header length = 640, key length = 
4; number of flows = 600 per read. 

Clarification on where this 5 byte padding region occurs would be helpful. I've 
tried multiple sff files with the same error encountered when reading the file 
through the SffIO module. Has the format of acceptable sff files changed?

Using biopython version 1.53; glu genetics 1.0b2-dev; Using ubuntu 10.04 LTS

Thank you!

Original issue reported on code.google.com by Wong.Carol.h@gmail.com on 1 Apr 2011 at 8:17