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PierreBSC / Viral-Track

MIT License
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input fastq files #20

Closed zji90 closed 2 years ago

zji90 commented 2 years ago

Hi,

I am running the provided example and encountered the following error when processing hgmm_100_R1_extracted.fastq.gz . I wonder if both the hgmm_100_R1_extracted.fastq.gz and hgmm_100_R2_extracted.fastq.gz are needed in Target_file.txt. Thanks.

EXITING because of FATAL ERROR in reads input: quality string length is not equal to sequence length @ST-K00126:308:HFLYFBBXX:1:2217:14570:6238_CCTCAGTTCCACGCAG_GGCCACTCCG +

SOLUTION: fix your fastq file

Dec 25 10:20:03 ...... FATAL ERROR, exiting

zji90 commented 2 years ago

It seems that we have input the wrong bam file. The issue has been solved.