Open GhobrialMoheb opened 2 years ago
Hi, good day.
I would like to ask if one can I use the FASTQ files generated from cell ranger to continue the processing ? Cellranger generates FASTQ files as described in: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq Would that correspond to the steps 1-3 of (https://github.com/CGATOxford/UMI-tools/blob/master/doc/Single_cell_tutorial.md)?
Thanks for letting me know.
Hi, good day.
I would like to ask if one can I use the FASTQ files generated from cell ranger to continue the processing ? Cellranger generates FASTQ files as described in: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq Would that correspond to the steps 1-3 of (https://github.com/CGATOxford/UMI-tools/blob/master/doc/Single_cell_tutorial.md)?
Thanks for letting me know.