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Pinlyu3 / CellAnn_shinyapp

CellAnn
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Error in prepare_CellAnn(obj_joinlayers, matrix_name = "RNA", dims = "umap.harmony", : no slot of name "counts" for this object of class "Assay5" #3

Open levinhein opened 6 months ago

levinhein commented 6 months ago

Hi. I have a harmony integrated object, seurat v5. It is already processed to join all the layers. During prepare_CellAnn(), I encounter this error saying no slot for counts even though I have it in the object.

Error in prepare_CellAnn(obj_joinlayers, matrix_name = "RNA", dims = "umap.harmony",  : 
  no slot of name "counts" for this object of class "Assay5"

How to resolve this?

dincerkilic commented 4 months ago

Hi @levinhein. I have the same problem. I wanted to ask if you managed to fix it?