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PitchInteractiveInc / Phinch

Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch Interactive, a data visualization studio in Oakland, CA, and biological researchers at UC Riverside.
http://phinch.org/
BSD 2-Clause "Simplified" License
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Trouble with Uploading to Phinch #55

Closed kmgallagher closed 8 years ago

kmgallagher commented 8 years ago

I am using chrome, and qiime 190 I converted my biom file to a json file successfully (I think). When I click load the file, does load the file but I get the black loading circle . The circle never goes away and I never get to visualize my data even though it appears to have accepted my format. Here is the header that I have: {"id": "None","format": "Biological Observation Matrix 2.1.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.3","date": "2016-04-06T12:21:52.378948","type": "OTU table","matrix_element_type": "float","shape": [2307, 3],"data": Thanks, KG

hollybik commented 8 years ago

Your BIOM file is in the wrong format (v2.0) - it needs to be converted to v1.0. Phinch does not support BIOM 2.0 files or higher (HDF5 format, the new default output format for QIIME 1.9 and higher); these files MUST be converted to JSON-formatted BIOM 1.0 files before they can be loaded into Phinch.

See the Quick Start Guide: https://github.com/PitchInteractiveInc/Phinch/wiki/Quick-Start or troubleshoot/convert according to this thread: https://github.com/PitchInteractiveInc/Phinch/issues/46