search

PitchInteractiveInc / Phinch

Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch Interactive, a data visualization studio in Oakland, CA, and biological researchers at UC Riverside.
http://phinch.org/
BSD 2-Clause "Simplified" License
149 stars 30 forks source link

Mothur Biom in Phinch Desktop #89

Open junkim83 opened 2 years ago

junkim83 commented 2 years ago

I made biom file using Mothur followed by tutorial.

When I made biom file in the Mothur using 'make.biom' like below, Phich Desktop gave me an error message.

make.biom(shared=final.tx.1.subsample.1.pick.shared, constaxonomy=final.tx.1.cons.taxonomy), metadata=mouse.dpw.metadata biom.zip

image

When I made biom file in the Mothur using 'make.biom' like below, Phich Desktop generate the figure, but I can't change the taxonomy level.

make.biom(shared=final.tx.1.subsample.1.pick.shared, constaxonomy=final.tx.1.cons.taxonomy), metadata=mouse.dpw.metadata, output=simple

What I've done wrong?

I've attached two biom file I generated.

Thanks,