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Planeshifter / node-Rstats

[UNMAINTAINED] An interface for node.js to statistical programming language R based on the fabulous Rcpp package
GNU General Public License v2.0
58 stars 16 forks source link

rstats installation failing #14

Closed ravianarase closed 8 years ago

ravianarase commented 8 years ago

node version-v5.2.0 npm version- 3.5.2 Error- npm ERR! Linux 3.19.0-37-generic npm ERR! argv "/usr/local/bin/node" "/usr/local/bin/npm" "install" npm ERR! node v5.2.0 npm ERR! npm v3.5.2 npm ERR! code ELIFECYCLE

npm ERR! rstats@0.3.1 install: node-gyp rebuild npm ERR! Exit status 1 npm ERR! npm ERR! Failed at the rstats@0.3.1 install script 'node-gyp rebuild'. npm ERR! Make sure you have the latest version of node.js and npm installed. npm ERR! If you do, this is most likely a problem with the rstats package, npm ERR! not with npm itself. npm ERR! Tell the author that this fails on your system: npm ERR! node-gyp rebuild npm ERR! You can get information on how to open an issue for this project with: npm ERR! npm bugs rstats npm ERR! Or if that isn't available, you can get their info via: npm ERR! npm owner ls rstats npm ERR! There is likely additional logging output above.

npm ERR! Please include the following file with any support request: npm ERR! /home/ravindra/RAVI/PROJECT/ECG/npm-debug.log

voxnonecho commented 8 years ago

Same. Here's my output:

npm ERR! node v5.4.0                                                                                                                                                                                                                      
npm ERR! npm  v3.3.12                                                                                                                                                                                                                     
npm ERR! code ELIFECYCLE                                                                                                                                                                                                                  

npm ERR! rstats@0.3.1 install: `node-gyp rebuild`                                                                                                                                                                                         
npm ERR! Exit status 1                                                                                                                                                                                                                    
npm ERR!                                                                                                                                                                                                                                  
npm ERR! Failed at the rstats@0.3.1 install script 'node-gyp rebuild'.                                                                                                                                                                    
npm ERR! Make sure you have the latest version of node.js and npm installed.                                                                                                                                                              
npm ERR! If you do, this is most likely a problem with the rstats package,                                                                                                                                                                
npm ERR! not with npm itself.                                                                                                                                                                                                             
npm ERR! Tell the author that this fails on your system:                                                                                                                                                                                  
npm ERR!     node-gyp rebuild                                                                                                                                                                                                             
npm ERR! You can get their info via:                                                                                                                                                                                                      
npm ERR!     npm owner ls rstats                                                                                                                                                                                                          
npm ERR! There is likely additional logging output above.                                                                                                                                                                                 

npm ERR! Please include the following file with any support request:                                                                                                                                                                      
npm ERR!     /home/elm/npm-debug.log

Additional info:

elm@elm:~$ python --version                                                                                                                                                                                                               
Python 2.7.6                                                                                                                                                                                                                              
elm@elm:~$ gcc -v                                                                                                                                                                                                                         
Using built-in specs.                                                                                                                                                                                                                     
COLLECT_GCC=gcc                                                                                                                                                                                                                           
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper                                                                                                                                                                         
Target: x86_64-linux-gnu                                                                                                                                                                                                                  
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.4-2ubuntu1~14.04' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 -
-enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-
libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-
gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
 --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-
linux-gnu                                                                                                                                                                                                                                 
Thread model: posix                                                                                                                                                                                                                       
gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04)                                                                                                                                                                                           
elm@elm:~$ make --version                                                                                                                                                                                                                 
GNU Make 3.81                                                                                                                                                                                                                             
Copyright (C) 2006  Free Software Foundation, Inc.                                                                                                                                                                                        
This is free software; see the source for copying conditions.                                                                                                                                                                             
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A                                                                                                                                                                       
PARTICULAR PURPOSE.                                                                                                                                                                                                                       

This program built for x86_64-pc-linux-gnu

Link to npm-debug.log: https://elm.bi/npm-debug.log

erickramer commented 8 years ago

Failed for me too. Same error.

Planeshifter commented 8 years ago

The root of this issue is that the current version of the package on npm does not support node versions 4.0.0 and upwards due to breaking changes in the nan package. I am working on updating the package and expect to have a new version on npm by the end of this week. For now, you might want to check out this fork https://github.com/ijsf/node-Rstats/tree/0918c18a9b6a865aced557ce2d9c1d26ea155126 by ijsf, who was so kind to update the package so that it works with current node versions.

ravianarase commented 8 years ago

thanks solved problem!

philcontrolf1 commented 7 years ago

Has this issue been resolved? I'm still seeing the same issue as @ravianarase was seeing in January (probably because I'm still seeing v0.3.1).

chrislarsenqlik commented 7 years ago

So is current status that it is not usable on the current version of node? Latest I am seeing is 7mos ago. Thanks

philcontrolf1 commented 7 years ago

I can't get it to work. But I'm not a node guru.

petegordon commented 7 years ago

Hi Sorry for the double post just posted this to the open issue #16 also.

Hi everyone! I am so very close to having it fully working with the latest versions of NodeJS. In fact it does work; but there seems to be a last problem with running cat or print causing a segmentation fault; but other calls work fine even writeFiles. You can install the npm module from github; and it will automatically clone and build RInside using npm package.json preinstall as a new package called RInsideNodeJS; from this repo fork... https://github.com/ColumbusCollaboratory/rinside) because the RINSIDE_CALLBACKS flag needed to be defined for NAN to work apparently. Try it by simply running this...

npm install https://github.com/ColumbusCollaboratory/node-Rstats

I'll pick up working on it next week; to try to find the segmentation fault problem which is apparently output stream related (anything that uses standard out in R--maybe the problem area). (fyi; I also changed it to use JSONLITE instead of RJSON).

sempervalor commented 7 years ago

Hey,

I have tried npm install rstats and I can't get pass this:

npm ERR! Linux 4.8.6-x86_64-linode78 npm ERR! argv "/root/.nvm/v4.6.2/bin/node" "/root/.nvm/v4.6.2/bin/npm" "install" "rstats" npm ERR! node v4.6.2 npm ERR! npm v2.15.11 npm ERR! code ELIFECYCLE

npm ERR! rstats@0.3.1 install: node-gyp rebuild npm ERR! Exit status 1 npm ERR! npm ERR! Failed at the rstats@0.3.1 install script 'node-gyp rebuild'. npm ERR! This is most likely a problem with the rstats package, npm ERR! not with npm itself. npm ERR! Tell the author that this fails on your system: npm ERR! node-gyp rebuild npm ERR! You can get information on how to open an issue for this project with: npm ERR! npm bugs rstats npm ERR! Or if that isn't available, you can get their info via: npm ERR! npm ERR! npm owner ls rstats npm ERR! There is likely additional logging output above.

npm ERR! Please include the following file with any support request: npm ERR! /root/re3Node/npm-debug.log

I have tried "node-gyp rebuild' but I also get errors:

gyp info spawn args '-Dvisibility=default', gyp info spawn args '-Dnode_root_dir=/root/.node-gyp/4.6.2', gyp info spawn args '-Dnode_gyp_dir=/root/.nvm/v4.6.2/lib/node_modules/node-gyp', gyp info spawn args '-Dnode_lib_file=node.lib', gyp info spawn args '-Dmodule_root_dir=/root/re3Node', gyp info spawn args '--depth=.', gyp info spawn args '--no-parallel', gyp info spawn args '--generator-output', gyp info spawn args 'build', gyp info spawn args '-Goutput_dir=.' ] gyp: binding.gyp not found (cwd: /root/re3Node) while trying to load binding.gyp gyp ERR! configure error gyp ERR! stack Error: gyp failed with exit code: 1 gyp ERR! stack at ChildProcess.onCpExit (/root/.nvm/v4.6.2/lib/node_modules/node-gyp/lib/configure.js:305:16) gyp ERR! stack at emitTwo (events.js:87:13) gyp ERR! stack at ChildProcess.emit (events.js:172:7) gyp ERR! stack at Process.ChildProcess._handle.onexit (internal/child_process.js:211:12) gyp ERR! System Linux 4.8.6-x86_64-linode78 gyp ERR! command "/root/.nvm/v4.6.2/bin/node" "/root/.nvm/v4.6.2/bin/node-gyp" "rebuild" gyp ERR! cwd /root/re3Node gyp ERR! node -v v4.6.2 gyp ERR! node-gyp -v v3.4.0 gyp ERR! not ok

Please advise.

Attached is the Debug file. npm-debug.txt