issues
search
Plant-Food-Research-Open
/
assemblyqc
A Nextflow pipeline for evaluating assembly quality
https://plant-food-research-open.github.io/assemblyqc/
MIT License
27
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Added gfastats
#145
GallVp
closed
18 hours ago
1
Reduced the GenomeTools stats figures to 300 DPI and set `synteny_mummer_min_bundle_size` is set to `1000000`
#144
GallVp
closed
22 hours ago
1
Version bumped to 2.2.0+dev
#143
GallVp
closed
1 day ago
1
Reduce report load time
#142
GallVp
opened
1 week ago
0
DNADIFF is killed by out of memory signal on SLURM
#141
GallVp
opened
1 week ago
0
Fixed the branch protection GitHub action
#140
GallVp
closed
1 week ago
1
Candidate for 2.1.1
#139
GallVp
closed
1 week ago
2
Formatted mermaid chart
#138
GallVp
closed
1 week ago
1
Version bump to 2.1.1
#137
GallVp
closed
1 week ago
1
Now correctly validating gff files for circular sequences
#136
GallVp
closed
1 week ago
1
Remove Bioconda `defaults` channel
#135
GallVp
closed
1 week ago
1
Fixed flowchart syntax to remove '\n'
#134
GallVp
closed
1 week ago
1
Updated modules to remove Bioconda `defaults` channel
#133
GallVp
closed
1 week ago
1
Fix flowchart syntax
#132
GallVp
closed
1 week ago
1
Made the `hic` param pattern more flexible
#131
GallVp
closed
1 week ago
2
`hic` parameter does not allow `.merged.fq.gz` name patten
#130
GallVp
closed
1 week ago
2
GFF3 validation fails for circular sequences
#129
GallVp
closed
1 week ago
2
Add HiC heatmap for combined haps
#128
christinawu2008
opened
2 weeks ago
0
Add compleasm
#127
christinawu2008
opened
2 weeks ago
1
Add gfastats
#126
GallVp
opened
2 weeks ago
2
Gene score distribution graph does not appear correctly
#125
GallVp
opened
3 weeks ago
0
What organisms is this designed for?
#124
tseemann
opened
1 month ago
1
Release 2.1.0
#123
GallVp
closed
2 months ago
1
Release candidate for 2.1.0
#122
GallVp
closed
2 months ago
1
Fixed multiple bin binds failure in ASSEMBLATHON_STATS
#121
GallVp
closed
2 months ago
1
Updated citation and fixed typos
#120
GallVp
closed
2 months ago
1
Updated modules and sub workflows
#119
GallVp
closed
2 months ago
1
Now soft masked regions are unmasked before computing LAI
#118
GallVp
closed
2 months ago
1
LAI is not computed for soft mask assemblies
#117
GallVp
closed
2 months ago
0
Can we automatically label sequences for PLOTSR?
#116
GallVp
opened
2 months ago
1
Updated check_module_versions script
#115
GallVp
closed
2 months ago
1
[UPDATE] GITHUB/NCBI/FCS -> 0.5.4
#114
GallVp
opened
2 months ago
1
[UPDATE] GITHUB/PYTHON/CPYTHON -> 3.12.4
#113
GallVp
opened
2 months ago
0
[UPDATE] GITHUB/OUSHUJUN/EDTA -> 2.2.0
#112
GallVp
opened
2 months ago
0
Updated fasta_ltrretriever_lai subworkflow from upstream
#111
GallVp
closed
2 months ago
1
Added a script to automatically check for updates on GitHub/GitLab and post issues
#110
GallVp
closed
2 months ago
1
[UPDATE] GITHUB/SHENWEI356/SEQKIT -> 2.8.2
#109
GallVp
opened
2 months ago
0
[UPDATE] GITHUB/NCBI/SRA-TOOLS -> 3.1.1
#108
GallVp
opened
2 months ago
0
Updated `SYRI` to 1.7.0
#107
GallVp
closed
2 months ago
1
Patched `LTRRETRIEVER_LTRRETRIEVER` for #92 and #98
#106
GallVp
closed
2 months ago
1
Updated modules
#105
GallVp
closed
2 months ago
1
[UPDATE] GITHUB/SCHNEEBERGERLAB/SYRI -> 1.7.0
#104
GallVp
closed
2 months ago
0
Fixed PLOTSR tokenize bug
#103
GallVp
closed
2 months ago
1
PLOTSR failure due to `tokenize('.on.')`
#102
GallVp
closed
2 months ago
0
Updated NCBI FCS GX to 0.5.4
#101
GallVp
closed
2 months ago
1
Created summary presence/absence tables for NCBI FCS modules
#100
GallVp
closed
2 months ago
1
Added min. system requirements
#99
GallVp
closed
2 months ago
0
LTRRETRIEVER_LTRRETRIEVER fails when the input assembly is not writable
#98
GallVp
closed
2 months ago
0
Changed default branch name from `master` to `main` in nf-core template files
#97
GallVp
closed
2 months ago
1
Fixed cds_length_distribution bug
#96
GallVp
closed
2 months ago
1
Next