What organisms is this designed for?

Plant-Food-Research-Open / assemblyqc

A Nextflow pipeline for evaluating assembly quality

MIT License

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Open tseemann opened 2 months ago

tseemann commented 2 months ago

It is unclear if this pipeline will work on any organism assembly?

Is it haploid genomes only? Is it especially for bacteria?

GallVp commented 2 months ago

Hi @tseemann

At Plant&Food we have been using the pipeline to QC genomes of plants, animals, and fungi. It was also tested with a bacterial genome.

We have also used it on diploid genomes. The two haplotypes can be processed in parallel by inputting them as two fasta files.