Liftoff allows single base introns

[GallVp]

Description of the bug

Single base introns do not make sense and also breaks the GXF_FASTA_AGAT_SPADDINTRONS_SPEXTRACTSEQUENCES subworkflow at

https://github.com/Plant-Food-Research-Open/genepal/blob/24a8f50e241105b98c88035fd9c2a0cad8ff728f/subworkflows/gallvp/gxf_fasta_agat_spaddintrons_spextractsequences/main.nf#L64

Command used and terminal output

No response

Relevant files

No response

System information

plant-food-research-open/genepal 0.4.0

[GallVp]

Use agat/sp_sp_flag_short_introns.pl to mark any intron shorter than 10 and filter the corresponding genes. Relevant issues and PRs,

• https://github.com/GallVp/nxf-components/pull/42
• https://github.com/nf-core/modules/issues/6963