Add trait present classes that don't match the pattern

[ramonawalls]

For PRESENT CLASSES in patterns, I had to REMOVE the following rows, because they don't match the pattern:

• PPO:0002000 plant phenological trait PATO:'quality' A {PATO:'quality'} of a {'portion of a plant'} or a {whole plant} that provides phenologically relevant information about the 'portion of a plant' or the 'whole plant'. Not a present trait at all
• PPO:0002300 plant structures present 'plant structure presence' 'plant structure presence' THAT 'quality of' SOME ('whole plant' THAT 'has visible part' SOME 'plant structure') (Lacks the depends on clause)
• PPO:0002356 abscised plant structures present 'abscised plant structure presence' PO:'plant structure' 'abscised plant structure presence' AND 'quality of' SOME ('whole plant' AND 'abscised' SOME PO:'plant structure') AND 'depends on structure' SOME ('abscised' SOME PO:'plant structure') Includes abscised clause
• PPO:0002357 abscised leaves present 'abscised leaf presence' 'true leaf' 'abscised plant structure presence' AND 'quality of' SOME ('whole plant' AND 'abscised' SOME 'true leaf') AND 'depends on structure' SOME ('abscised' SOME 'true leaf') Includes abscised clause
• PPO:0002358 abscised fruits or seeds present 'abscised fruit or seed presence' 'ripe fruit' OR 'mature seed' 'abscised plant structure presence' AND 'quality of' SOME ('whole plant' AND 'abscised' SOME ('ripe fruit' OR 'mature seed')) AND 'depends on structure' SOME ('abscised' SOME ('ripe fruit' OR 'mature seed')) Includes abscised clause
• PPO:0002359 abscised cones or seeds present 'abscised cone or seed presence' 'ripe seed cone' OR 'mature seed' abscised plant structure presence' AND 'quality of' SOME ('whole plant' AND 'abscised' SOME ('ripe seed cone' OR 'mature seed')) AND 'depends on structure' SOME ('abscised' SOME ('ripe seed cone' OR 'mature seed')) Includes abscised clause

They will need to be added to a template.

We are no longer including GCIs

[ramonawalls]

Note that when creating PPO:0002000, "portion of plant" should be removed per issue #85.

[ramonawalls]

template complete. Reference to portion of plant removed.