An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.
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Add trait absent classes that do not match the pattern #95
For ABSENT CLASSES in patterns, I had to REMOVE the following rows for abscised structures:
Class PPO:0002655 'abscised plant structures absent' 'abscised plant structure presence' 'plant structure' An {abscised plant structure presence} trait that is a {quality of} a {whole plant} from which none of some {plant structure} have been abscised or removed. "'abscised plant structure presence' AND 'has quality datum' SOME (
'data item' AND (
('upper count' VALUE 0) OR ('upper percent' VALUE 0.0)
)
) " 'abscised plant structures present' "'abscised plant structure presence' AND 'quality of' SOME (
'whole plant' AND NOT ('abscised' SOME 'plant structure')
) AND 'depends on structure' ONLY (
NOT ('abscised' SOME 'plant structure')
)"
Class PPO:0002656 'abscised leaves absent' 'abscised leaf presence' 'true leaf' An {abscised leaf presence} trait that is a {quality of} a {whole plant} from which no true leaves {$true leaf} have been {abscised}. "'abscised leaf presence' AND 'has quality datum' SOME (
'data item' AND (
('upper count' VALUE 0) OR ('upper percent' VALUE 0.0)
)
) " 'abscised leaves present' "'abscised plant structure presence' AND 'quality of' SOME (
'whole plant' AND NOT ('abscised' SOME 'true leaf')
) AND 'depends on structure' ONLY (
NOT ('abscised' SOME 'true leaf')
)"
Class PPO:0002657 'abscised fruits or seeds absent' 'abscised fruit or seed presence' 'ripe fruit' OR 'mature seed' An {abscised fruit or seed presence} trait that is a {quality of} a {whole plant} from which no ripe fruits {$ripe fruit} have been abscised or removed by herbivores and that does not have any ripe fruits that have {abscised} any mature seeds {$mature seed}. "'abscised fruit or seed presence' AND 'has quality datum' SOME (
'data item' AND (
('upper count' VALUE 0) OR ('upper percent' VALUE 0.0)
)
) " 'abscised fruits or seeds present' "'abscised plant structure presence' AND 'quality of' SOME (
'whole plant' AND NOT ('abscised' SOME ('ripe fruit' OR 'mature seed'))
) AND 'depends on structure' ONLY (
NOT ('abscised' SOME ('ripe fruit' OR 'mature seed'))
)"
Class PPO:0002658 'abscised cones or seeds absent' 'abscised cone or seed presence' 'ripe seed cone' OR 'mature seed' An {abscised cone or seed presence} trait that is a {quality of} a {whole plant} from which no ripe seed cones {$ripe seed cone} have been abscised or removed by herbivores and that does not have any ripe seed cones that have {abscised} any mature seeds {$mature seed}. "'abscised cone or seed presence' AND 'has quality datum' SOME (
'data item' AND (
('upper count' VALUE 0) OR ('upper percent' VALUE 0.0)
)
) " 'abscised cones or seeds present' "'abscised plant structure presence' AND 'quality of' SOME (
'whole plant' AND NOT ('abscised' SOME ('ripe seed cone' OR 'mature seed'))
) AND 'depends on structure' ONLY (
NOT ('abscised' SOME ('ripe seed cone' OR 'mature seed')))"
ramonawalls
commented
1 week ago
For ABSENT CLASSES in patterns, I had to REMOVE the following rows for abscised structures:
Class PPO:0002655 'abscised plant structures absent' 'abscised plant structure presence' 'plant structure' An {abscised plant structure presence} trait that is a {quality of} a {whole plant} from which none of some {plant structure} have been abscised or removed. "'abscised plant structure presence' AND 'has quality datum' SOME ( 'data item' AND ( ('upper count' VALUE 0) OR ('upper percent' VALUE 0.0) ) ) " 'abscised plant structures present' "'abscised plant structure presence' AND 'quality of' SOME ( 'whole plant' AND NOT ('abscised' SOME 'plant structure') ) AND 'depends on structure' ONLY ( NOT ('abscised' SOME 'plant structure') )"
Class PPO:0002656 'abscised leaves absent' 'abscised leaf presence' 'true leaf' An {abscised leaf presence} trait that is a {quality of} a {whole plant} from which no true leaves {$true leaf} have been {abscised}. "'abscised leaf presence' AND 'has quality datum' SOME ( 'data item' AND ( ('upper count' VALUE 0) OR ('upper percent' VALUE 0.0) ) ) " 'abscised leaves present' "'abscised plant structure presence' AND 'quality of' SOME ( 'whole plant' AND NOT ('abscised' SOME 'true leaf') ) AND 'depends on structure' ONLY ( NOT ('abscised' SOME 'true leaf') )"
Class PPO:0002657 'abscised fruits or seeds absent' 'abscised fruit or seed presence' 'ripe fruit' OR 'mature seed' An {abscised fruit or seed presence} trait that is a {quality of} a {whole plant} from which no ripe fruits {$ripe fruit} have been abscised or removed by herbivores and that does not have any ripe fruits that have {abscised} any mature seeds {$mature seed}. "'abscised fruit or seed presence' AND 'has quality datum' SOME ( 'data item' AND ( ('upper count' VALUE 0) OR ('upper percent' VALUE 0.0) ) ) " 'abscised fruits or seeds present' "'abscised plant structure presence' AND 'quality of' SOME ( 'whole plant' AND NOT ('abscised' SOME ('ripe fruit' OR 'mature seed')) ) AND 'depends on structure' ONLY ( NOT ('abscised' SOME ('ripe fruit' OR 'mature seed')) )"
Class PPO:0002658 'abscised cones or seeds absent' 'abscised cone or seed presence' 'ripe seed cone' OR 'mature seed' An {abscised cone or seed presence} trait that is a {quality of} a {whole plant} from which no ripe seed cones {$ripe seed cone} have been abscised or removed by herbivores and that does not have any ripe seed cones that have {abscised} any mature seeds {$mature seed}. "'abscised cone or seed presence' AND 'has quality datum' SOME ( 'data item' AND ( ('upper count' VALUE 0) OR ('upper percent' VALUE 0.0) ) ) " 'abscised cones or seeds present' "'abscised plant structure presence' AND 'quality of' SOME ( 'whole plant' AND NOT ('abscised' SOME ('ripe seed cone' OR 'mature seed')) ) AND 'depends on structure' ONLY ( NOT ('abscised' SOME ('ripe seed cone' OR 'mature seed')))"
They will need to be added to a template.
We are no longer including GCIs.