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PlantProteomes / SeqComparison

A project for comparing plant proteome sequences
Apache License 2.0
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Create comparison table of 10 Arabidopsis proteomes #13

Open edeutsch opened 2 years ago

edeutsch commented 2 years ago

Hi, okay, there is one additional FASTA that we want to include now. I have just added it to the Arabidopsis get_data.sh:

curl -O -R ftp://ftp.peptideatlas.org/pub/PeptideAtlas/Proteomes/arabidopsis/Pseudogenes.fasta

Its preferred position should be after TAIR10

So please create an updated matrix table with 10 proteomes:

where AraportUpdated is the one that you created.

edeutsch commented 2 years ago

oh, and I meant to mention, you might take a moment read through a little background on pseudogenes: https://en.wikipedia.org/wiki/Pseudogene