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PlantReactome / testing-issues

Tracker for issues discovered during pre-release testing.
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Some diagrammed proteins, some complexes in nucleoplasm are missing underlying info #17

Open preecej opened 5 years ago

preecej commented 5 years ago

They appear in the diagram, but underlying info is missing. Also not present in search. NOTE: All other elements in diagram, inc. seven proteins outside of nucleoplasm, are fine.

preecej commented 5 years ago

also impacts expression analysis ( per @guptapa ) showing error msg for: ASR1, ASR5, ART1, and WRKY22 expression https://plantreactomedev.oicr.on.ca/PathwayBrowser/#/R-OSA-9639136&SEL=R-OSA-9639205&PATH=R-OSA-8932729,R-OSA-9618278&DTAB=EX

preecej commented 5 years ago

Also present in this pathway (likely same issue; will be addressed in upcoming software release): Confirmed that the listing for these Complexes are not present in the bottom Molecules pane; will be addressed with updated Java builds; early in next release development cycle (starting in 1.5 wks). http://plantreactomedev.oicr.on.ca/PathwayBrowser/#/R-OSA-9623492&PATH=R-OSA-9030769,R-OSA-9031669,R-OSA-9623902,R-OSA-9623903&DTAB=MT RISBZ1-RPBF complex doesn't show details, components http://plantreactomedev.oicr.on.ca/PathwayBrowser/#/R-OSA-9626305&PATH=R-OSA-9030769,R-OSA-9031669,R-OSA-9623902&DTAB=MT RISBZ1-RPBF & BP5-EBP89 complexes don't show details, components http://plantreactomedev.oicr.on.ca/PathwayBrowser/#/R-OSA-9035605&PATH=R-OSA-9030769,R-OSA-9031669,R-OSA-9623902 none of miRNA:mRNA complexes show components

preecej commented 5 years ago

Check: Development of root hair, Response to Aluminum stress, and Aleurone layer formation.

preecej commented 5 years ago

Working solution: Update Java repos for browser and graph converter to Reactome 3.6 (upcoming software release). This will align RCT SQL schema, Neo4j schema, and browser code.