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PlantandFoodResearch / MCHap

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
MIT License
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Table with likelihood of membership of a read in an allele #160

Open rfinkers opened 1 year ago

rfinkers commented 1 year ago

Would it be possible to write a table, for each locus, in which the likelihood that a read belongs to an allele is reported?

timothymillar commented 1 year ago

Hi @rfinkers. It's definitely possible, but I'll need to think about how to report the data in the VCF format. We could potentially report it in an (optional) FORMAT field and have a simple script to extract it from the VCF and write a plain text table.