Correct usage of `AN` field

PlantandFoodResearch / MCHap

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

MIT License

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Correct usage of `AN` field #176

Closed timothymillar closed 5 months ago

timothymillar commented 5 months ago

MCHap is currently reporting the number of unique alleles called. The correct interpretation should be the total number of alleles called (samples * ploidy if there are no missing alleles). The number of unique alleles called could be reported in a new field e.g. UAN.