When reducing haplotype-blocks to there constituent SNPs (#72), many SNPs will be redundant for the purpose of differentiating among the present haplotypes. It would be useful to identify the minimum set of SNPs required to differentiate among haplotypes and then tag or remove the redundant SNPs from the output VCF.
Depends on #72
When reducing haplotype-blocks to there constituent SNPs (#72), many SNPs will be redundant for the purpose of differentiating among the present haplotypes. It would be useful to identify the minimum set of SNPs required to differentiate among haplotypes and then tag or remove the redundant SNPs from the output VCF.