-f/--families Repeat element/transposon categories to be used. These must be exact string match's to start of read name and are used to split reads into categories for analysis. Not specifying at least one valid category will result in empty output files. Default = None.
Does this mean if I don't out in anything it won't retrun anything or maybe there's a default to run through ALL families?
Does this mean if I don't out in anything it won't retrun anything or maybe there's a default to run through ALL families?