Encoding issue with non ASCII characters

[cpommier]

Example: current Wheat_td.csv Trait description is missing ü in Müller toward the end:

Septoria nodorum blotch incidence in the plants caused by the agent Stagonospora nodorum (syn. Septoria glume blotch) (Phaeosphaeria nodorum (E. M ller) Hedjaroude (syn. Stagonospora nodorum).

Should be:

Septoria nodorum blotch incidence in the plants caused by the agent Stagonospora nodorum (syn. Septoria glume blotch) (Phaeosphaeria nodorum (E. Müller) Hedjaroude (syn. Stagonospora nodorum).

I have created a dedicated branch. We are working on it and will let you know as soon as it seems complete by assigning it to @marieALaporte if that's fine with you. Let us know if you want to discuss this.

[cpommier]

See https://github.com/Planteome/ibp-wheat-traits/tree/fix/char_encoding%2313

[cooperl09]

It is correct in the obo file.
Also displays correctly on our browser: http://dev.planteome.org/amigo/term/CO_321:0000917 (set text encoding to Western) Capitalization does need to be corrected, though.

[cpommier]

Hi We have two masters here the obo and the csv. The obo is the master for planteome, and the csv for other systems. The obo might be ok but the csv is broken, hence need fixing. There are some synonyms and some variable name that have encoding problems too, and that's an integration problem that needs solving quickly :)

[cpommier]

Ok it seems better now. I propose two merge request:

• One to rationalize trait classs, to merge or discuss first
• One for encoding to merge in master once it has received the first one