TO ID that exist in to.obo

[elserj]

While working on something for @jaiswalp, I noticed a reference to TO:1000075 on Line 2937 that doesn't appear to have a corresponding term in to.obo.

https://github.com/Planteome/ibp-potato-traits/blob/master/potato-trait-ontology_withcropname.obo#L2937

[jaiswalp]

Best match is http://browser.planteome.org/amigo/term/TO:0006053

[Term]

id: CO_330:0000410

name: potato tuber zinc concentration in fresh weight basis trait

def: "The concentration of zinc in fresh weight basis" [CO:curators]

is_a: TO:1000075

Suggest replacing is_a: TO:1000075 with TO:0006053

Pankaj

On 9/30/2020 2:31 PM, elserj wrote:

While working on something for @jaiswalp https://github.com/jaiswalp, I noticed a reference to TO:1000075 on Line 2937 that doesn't appear to have a corresponding term in to.obo.

https://github.com/Planteome/ibp-potato-traits/blob/master/potato-trait-ontology_withcropname.obo#L2937 https://github.com/Planteome/ibp-potato-traits/blob/master/potato-trait-ontology_withcropname.obo#L2937

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-- Pankaj Jaiswal, PhD Professor Dept. of Botany and Plant Pathology 2082 Cordley Hall Oregon State University Corvallis, OR, 97331 USA Ph.: +1-541-737-8471 Fax: +1-541-737-3573 email: jaiswalp@oregonstate.edu Web: http://jaiswallab.cgrb.oregonstate.edu

[cooperl09]

The correct mapping is: TO:1000073 | shoot system zinc content'

Copy and paste error from the mapping spreadsheet Will fix in the file and update

[cooperl09]

Fixed in https://github.com/Planteome/CO_330-potato-traits/commit/3540d92d3a29f456b7561f92bf9e2e56210818eb