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Planteome / amigo

This repo is the Planteome fork of geneontology.org AmiGO2 project. Issues in this repo should be reported only on AmiGO issues. Issues can be pushed upstream if relevant for GO.
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PECO definition source appears twice in the browser, but is not in the file #35

Open cooperl09 opened 6 years ago

cooperl09 commented 6 years ago

See: http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab

http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab

Compare to stanza in file: [Term] id: PECO:0007359 name: plant experimental condition alt_id: EO:0007359 def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response." [GR:pj, PO:cooperl]

Not sure why this is occurring in this ontology only?

cmungall commented 6 years ago

Hmm, this shouldn't be happening, there is no eo.owl in https://github.com/Planteome/planteome-core/blob/master/planteome.owl

On 9 Jan 2018, at 11:44, Laurel Cooper wrote:

See: http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab

http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab

Compare to stanza in file: [Term] id: PECO:0007359 name: plant experimental condition alt_id: EO:0007359 def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response." [GR:pj, PO:cooperl]

Not sure why this is occurring in this ontology only?

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cmungall commented 6 years ago

oh I see one URL is prod and another dev, I assume the prod one hasn't been updated since the EO->PECO switch

On 9 Jan 2018, at 11:49, Chris Mungall wrote:

Hmm, this shouldn't be happening, there is no eo.owl in https://github.com/Planteome/planteome-core/blob/master/planteome.owl

On 9 Jan 2018, at 11:44, Laurel Cooper wrote:

See: http://browser.planteome.org/amigo/term/EO:0007359#display-lineage-tab

http://dev.planteome.org/amigo/term/PECO:0007359#display-lineage-tab

Compare to stanza in file: [Term] id: PECO:0007359 name: plant experimental condition alt_id: EO:0007359 def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied to a whole plant (PO:0000003), a plant structure (PO:00090119), and/or a plant population as part of an experiment to evaluate the plant response." [GR:pj, PO:cooperl]

Not sure why this is occurring in this ontology only?

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elserj commented 6 years ago

Correct, the actual issue is that the "source" references are there twice ( GR:pj, PO:cooperl, GR:pj, PO:cooperl). Happens on both dev and live, so the issue is not new, but wasn't noticed before and apparently only happens with peco terms, although I haven't verified this.