Open jaiswalp opened 7 years ago
How about taking the primary file http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/genomic-proteomic/gene/genes-3702-as-class.obo
and adding synonyms based on the mapped AT_ID to the gene symbols available from http://www.arabidopsis.org/download_files/Genes/gene_aliases_20130831.txt
e.g. adding following synonyms AT5G64770 CLEL 9 CLE-like 9 AT5G64770 RGF9 root meristem growth factor 9
to
[Term] id: NCBI_Gene:836598 name: AT5G64770 is_a: SO:0001217 synonym: "CLEL 9" RELATED [] synonym: "CLE-like 9" RELATED [] synonym: "RGF9" RELATED [] synonym: "root meristem growth factor 9" RELATED [] synonym: "GLV2" RELATED [] synonym: "GOLVEN 2" RELATED [] synonym: "MVP7.10" RELATED [] synonym: "MVP7_10" RELATED [] synonym: "AT5G64770" EXACT [TAIR:AT5G64770] xref: TAIR:AT5G64770 relationship: encoded_by NCBITaxon:3702 relationship: part_of Chromosome:3702-5
How about taking the primary file http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/genomic-proteomic/gene/genes-3702-as-class.obo
and adding synonyms based on the mapped AT_ID to the gene symbols available from http://www.arabidopsis.org/download_files/Genes/gene_aliases_20130831.txt
e.g. adding following synonyms AT5G64770 CLEL 9 CLE-like 9 AT5G64770 RGF9 root meristem growth factor 9
to
[Term] id: NCBI_Gene:836598 name: AT5G64770 is_a: SO:0001217 synonym: "CLEL 9" RELATED [] synonym: "CLE-like 9" RELATED [] synonym: "RGF9" RELATED [] synonym: "root meristem growth factor 9" RELATED [] synonym: "GLV2" RELATED [] synonym: "GOLVEN 2" RELATED [] synonym: "MVP7.10" RELATED [] synonym: "MVP7_10" RELATED [] synonym: "AT5G64770" EXACT [TAIR:AT5G64770] xref: TAIR:AT5G64770 relationship: encoded_by NCBITaxon:3702 relationship: part_of Chromosome:3702-5