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Repository for the Plant Disease Ontology
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Sarocladium oryzae (PDO:0000083) #146

Closed seymourmegan closed 8 years ago

seymourmegan commented 9 years ago

Sarocladium oryzae (PDO:0000083) def'n: A fungal species (PDO:0000069) that causes various plant fungal diseases (PDO:0000004).

Name Source: Rice Diseases APS NCBI_Taxonomy_ID: 284135 EOL: 1013725 Alternative Names:

seymourmegan commented 9 years ago

Sarocladium oryzae (PDO:0000083)

Updated and added relationships between diseases and pathogens.

Updated Sarocladium oryzae (PDO:0000083) def'n.

phismith commented 9 years ago

These are not definitions. They are statements about instances of the species in question (that some of them cause that disease). For species the correct definitional approach is just to identify the relevant NCBI taxon. BS

On Thu, Sep 3, 2015 at 6:56 PM, Megan Seymour notifications@github.com wrote:

Sarocladium oryzae (PDO:0000083)

Updated and added relationships between diseases and pathogens.

  • Changed relation: from Sarocladium oryzae (PDO:0000083) causal_agent_in Sarocladium oryzae pecky rice fungal disease (PDO:0000082) ---> Sarocladium oryzae pecky rice fungal disease (PDO:0000082) has_causal-agent Sarocladium oryzae (PDO:0000083).
  • Added relation: rice sheath rot fungal disease (PDO:0000053) has_causal-agent Sarocladium oryzae (PDO:0000083).

Updated Sarocladium oryzae (PDO:0000083) def'n.

  • Old def'n: A fungal species (PDO:0000069) that causes various plant fungal diseases (PDO:0000004).
  • New def'n: A fungal species (PDO:0000069) that causes Sarocladium oryzae pecky rice fungal disease (PDO:0000082) and rice sheath rot fungal disease (PDO:0000053).

— Reply to this email directly or view it on GitHub https://github.com/Planteome/plant-stress-ontology/issues/146#issuecomment-137595485 .

cmungall commented 8 years ago

@phismith is correct - I believe the eventual plan is to replace the taxon subset of PDO with NCBITaxon?

cooperl09 commented 8 years ago

Yes, in progress